Gene : Bostr.12659s0226 B. stricta v1.2
Defline:  (1 of 4) 2.5.1.16 - Spermidine synthase / Putrescine aminopropyltransferase Genomic Order:  226
Name:  ? Bostr.12659s0226 Secondary Identifier:  ? PAC:30652469
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bstricta BSUBPOLYAMSYN-PWY Boechera stricta pathologic  
Bstricta PWY-7528 Boechera stricta pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bostr.12659s0226 0.5kb upstream 0.5kb upstream 3267 true Scaffold12659: 1236191-1239457 Boechera stricta
Bostr.12659s0226 0.5kb upstream 0.5kb upstream 500 false Scaffold12659: 1236191-1236690 Boechera stricta
Bostr.12659s0226 0.5kb downstream 0.5kb downstream 3267 true Scaffold12659: 1236691-1239957 Boechera stricta
Bostr.12659s0226 0.5kb downstream 0.5kb downstream 500 false Scaffold12659: 1239458-1239957 Boechera stricta
Bostr.12659s0226 1.0kb upstream 1.0kb upstream 3767 true Scaffold12659: 1235691-1239457 Boechera stricta
Bostr.12659s0226 1.0kb upstream 1.0kb upstream 1000 false Scaffold12659: 1235691-1236690 Boechera stricta
Bostr.12659s0226 1.0kb downstream 1.0kb downstream 3767 true Scaffold12659: 1236691-1240457 Boechera stricta
Bostr.12659s0226 1.0kb downstream 1.0kb downstream 1000 false Scaffold12659: 1239458-1240457 Boechera stricta
Bostr.12659s0226 2.0kb upstream 2.0kb upstream 4767 true Scaffold12659: 1234691-1239457 Boechera stricta
Bostr.12659s0226 2.0kb upstream 2.0kb upstream 2000 false Scaffold12659: 1234691-1236690 Boechera stricta
Bostr.12659s0226 2.0kb downstream 2.0kb downstream 4767 true Scaffold12659: 1236691-1241457 Boechera stricta
Bostr.12659s0226 2.0kb downstream 2.0kb downstream 2000 false Scaffold12659: 1239458-1241457 Boechera stricta
Bostr.12659s0226 5.0kb upstream 5.0kb upstream 7767 true Scaffold12659: 1231691-1239457 Boechera stricta
Bostr.12659s0226 5.0kb upstream 5.0kb upstream 5000 false Scaffold12659: 1231691-1236690 Boechera stricta
Bostr.12659s0226 5.0kb downstream 5.0kb downstream 7767 true Scaffold12659: 1236691-1244457 Boechera stricta
Bostr.12659s0226 5.0kb downstream 5.0kb downstream 5000 false Scaffold12659: 1239458-1244457 Boechera stricta
Bostr.12659s0226 10.0kb upstream 10.0kb upstream 12767 true Scaffold12659: 1226691-1239457 Boechera stricta
Bostr.12659s0226 10.0kb upstream 10.0kb upstream 10000 false Scaffold12659: 1226691-1236690 Boechera stricta
Bostr.12659s0226 10.0kb downstream 10.0kb downstream 12767 true Scaffold12659: 1236691-1249457 Boechera stricta
Bostr.12659s0226 10.0kb downstream 10.0kb downstream 10000 false Scaffold12659: 1239458-1249457 Boechera stricta

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374349 5261 Brassicaceae View MSA
123837275 5264 Brassicales-Malvales View MSA
124342552 5266 SBM View MSA
124246037 5268 Malvidae View MSA
124061949 5270 Rosid View MSA
123741827 5271 Pentapetalae View MSA
122790008 5272 Eudicot View MSA
122043696 5273 Angiosperm View MSA
121346443 5274 Embryophyte View MSA
123424303 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain