Gene : Bostr.12645s0001 B. stricta v1.2
Defline:  (1 of 5) 4.1.1.39 - Ribulose-bisphosphate carboxylase / RuBP carboxylase Genomic Order:  1
Name:  ? Bostr.12645s0001 Secondary Identifier:  ? PAC:30669058
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bstricta CALVIN-PWY Boechera stricta pathologic  
Bstricta PHOTOALL-PWY Boechera stricta pathologic  
Bstricta PWY-5723 Boechera stricta pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bostr.12645s0001 0.5kb upstream 0.5kb upstream 1406 true Scaffold12645: 2779-4184 Boechera stricta
Bostr.12645s0001 0.5kb upstream 0.5kb upstream 500 false Scaffold12645: 2779-3278 Boechera stricta
Bostr.12645s0001 0.5kb downstream 0.5kb downstream 1406 true Scaffold12645: 3279-4684 Boechera stricta
Bostr.12645s0001 0.5kb downstream 0.5kb downstream 500 false Scaffold12645: 4185-4684 Boechera stricta
Bostr.12645s0001 1.0kb upstream 1.0kb upstream 1906 true Scaffold12645: 2279-4184 Boechera stricta
Bostr.12645s0001 1.0kb upstream 1.0kb upstream 1000 false Scaffold12645: 2279-3278 Boechera stricta
Bostr.12645s0001 1.0kb downstream 1.0kb downstream 1906 true Scaffold12645: 3279-5184 Boechera stricta
Bostr.12645s0001 1.0kb downstream 1.0kb downstream 1000 false Scaffold12645: 4185-5184 Boechera stricta
Bostr.12645s0001 2.0kb upstream 2.0kb upstream 2906 true Scaffold12645: 1279-4184 Boechera stricta
Bostr.12645s0001 2.0kb upstream 2.0kb upstream 2000 false Scaffold12645: 1279-3278 Boechera stricta
Bostr.12645s0001 2.0kb downstream 2.0kb downstream 2906 true Scaffold12645: 3279-6184 Boechera stricta
Bostr.12645s0001 2.0kb downstream 2.0kb downstream 2000 false Scaffold12645: 4185-6184 Boechera stricta
Bostr.12645s0001 5.0kb upstream 5.0kb upstream 4184 true Scaffold12645: 1-4184 Boechera stricta
Bostr.12645s0001 5.0kb upstream 5.0kb upstream 3278 false Scaffold12645: 1-3278 Boechera stricta
Bostr.12645s0001 5.0kb downstream 5.0kb downstream 5906 true Scaffold12645: 3279-9184 Boechera stricta
Bostr.12645s0001 5.0kb downstream 5.0kb downstream 5000 false Scaffold12645: 4185-9184 Boechera stricta
Bostr.12645s0001 10.0kb upstream 10.0kb upstream 4184 true Scaffold12645: 1-4184 Boechera stricta
Bostr.12645s0001 10.0kb upstream 10.0kb upstream 3278 false Scaffold12645: 1-3278 Boechera stricta
Bostr.12645s0001 10.0kb downstream 10.0kb downstream 10906 true Scaffold12645: 3279-14184 Boechera stricta
Bostr.12645s0001 10.0kb downstream 10.0kb downstream 10000 false Scaffold12645: 4185-14184 Boechera stricta

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380509 5261 Brassicaceae View MSA
123836682 5264 Brassicales-Malvales View MSA
124340616 5266 SBM View MSA
124250367 5268 Malvidae View MSA
124066802 5270 Rosid View MSA
123747186 5271 Pentapetalae View MSA
122796864 5272 Eudicot View MSA
122046951 5273 Angiosperm View MSA
121348432 5274 Embryophyte View MSA
123426346 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain