Gene : Bostr.13175s0017 B. stricta v1.2
Defline:  (1 of 1) PTHR21145:SF1 - CHORISMATE MUTASE 2 Genomic Order:  17
Name:  ? Bostr.13175s0017 Secondary Identifier:  ? PAC:30651619
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bstricta PWY-3461 Boechera stricta pathologic  
Bstricta PWY-3462 Boechera stricta pathologic  
Bstricta PWY-3481 Boechera stricta pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bostr.13175s0017 0.5kb upstream 0.5kb upstream 2466 true Scaffold13175: 74813-77278 Boechera stricta
Bostr.13175s0017 0.5kb upstream 0.5kb upstream 500 false Scaffold13175: 74813-75312 Boechera stricta
Bostr.13175s0017 0.5kb downstream 0.5kb downstream 2466 true Scaffold13175: 75313-77778 Boechera stricta
Bostr.13175s0017 0.5kb downstream 0.5kb downstream 500 false Scaffold13175: 77279-77778 Boechera stricta
Bostr.13175s0017 1.0kb upstream 1.0kb upstream 2966 true Scaffold13175: 74313-77278 Boechera stricta
Bostr.13175s0017 1.0kb upstream 1.0kb upstream 1000 false Scaffold13175: 74313-75312 Boechera stricta
Bostr.13175s0017 1.0kb downstream 1.0kb downstream 2966 true Scaffold13175: 75313-78278 Boechera stricta
Bostr.13175s0017 1.0kb downstream 1.0kb downstream 1000 false Scaffold13175: 77279-78278 Boechera stricta
Bostr.13175s0017 2.0kb upstream 2.0kb upstream 3966 true Scaffold13175: 73313-77278 Boechera stricta
Bostr.13175s0017 2.0kb upstream 2.0kb upstream 2000 false Scaffold13175: 73313-75312 Boechera stricta
Bostr.13175s0017 2.0kb downstream 2.0kb downstream 3966 true Scaffold13175: 75313-79278 Boechera stricta
Bostr.13175s0017 2.0kb downstream 2.0kb downstream 2000 false Scaffold13175: 77279-79278 Boechera stricta
Bostr.13175s0017 5.0kb upstream 5.0kb upstream 6966 true Scaffold13175: 70313-77278 Boechera stricta
Bostr.13175s0017 5.0kb upstream 5.0kb upstream 5000 false Scaffold13175: 70313-75312 Boechera stricta
Bostr.13175s0017 5.0kb downstream 5.0kb downstream 6966 true Scaffold13175: 75313-82278 Boechera stricta
Bostr.13175s0017 5.0kb downstream 5.0kb downstream 5000 false Scaffold13175: 77279-82278 Boechera stricta
Bostr.13175s0017 10.0kb upstream 10.0kb upstream 11966 true Scaffold13175: 65313-77278 Boechera stricta
Bostr.13175s0017 10.0kb upstream 10.0kb upstream 10000 false Scaffold13175: 65313-75312 Boechera stricta
Bostr.13175s0017 10.0kb downstream 10.0kb downstream 11966 true Scaffold13175: 75313-87278 Boechera stricta
Bostr.13175s0017 10.0kb downstream 10.0kb downstream 10000 false Scaffold13175: 77279-87278 Boechera stricta

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365997 5261 Brassicaceae View MSA
123835007 5264 Brassicales-Malvales View MSA
124338638 5266 SBM View MSA
124239132 5268 Malvidae View MSA
124062994 5270 Rosid View MSA
123742772 5271 Pentapetalae View MSA
122797161 5272 Eudicot View MSA
122050627 5273 Angiosperm View MSA
121312036 5274 Embryophyte View MSA
123427559 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain