Gene : Bostr.16335s0049 B. stricta v1.2
Defline:  (1 of 2) PTHR11361:SF89 - DNA MISMATCH REPAIR PROTEIN MSH6 Genomic Order:  49
Name:  ? Bostr.16335s0049 Secondary Identifier:  ? PAC:30675714
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bostr.16335s0049 0.5kb upstream 0.5kb upstream 5286 true Scaffold16335: 403527-408812 Boechera stricta
Bostr.16335s0049 0.5kb upstream 0.5kb upstream 500 false Scaffold16335: 408313-408812 Boechera stricta
Bostr.16335s0049 0.5kb downstream 0.5kb downstream 5286 true Scaffold16335: 403027-408312 Boechera stricta
Bostr.16335s0049 0.5kb downstream 0.5kb downstream 500 false Scaffold16335: 403027-403526 Boechera stricta
Bostr.16335s0049 1.0kb upstream 1.0kb upstream 5786 true Scaffold16335: 403527-409312 Boechera stricta
Bostr.16335s0049 1.0kb upstream 1.0kb upstream 1000 false Scaffold16335: 408313-409312 Boechera stricta
Bostr.16335s0049 1.0kb downstream 1.0kb downstream 5786 true Scaffold16335: 402527-408312 Boechera stricta
Bostr.16335s0049 1.0kb downstream 1.0kb downstream 1000 false Scaffold16335: 402527-403526 Boechera stricta
Bostr.16335s0049 2.0kb upstream 2.0kb upstream 6786 true Scaffold16335: 403527-410312 Boechera stricta
Bostr.16335s0049 2.0kb upstream 2.0kb upstream 2000 false Scaffold16335: 408313-410312 Boechera stricta
Bostr.16335s0049 2.0kb downstream 2.0kb downstream 6786 true Scaffold16335: 401527-408312 Boechera stricta
Bostr.16335s0049 2.0kb downstream 2.0kb downstream 2000 false Scaffold16335: 401527-403526 Boechera stricta
Bostr.16335s0049 5.0kb upstream 5.0kb upstream 9786 true Scaffold16335: 403527-413312 Boechera stricta
Bostr.16335s0049 5.0kb upstream 5.0kb upstream 5000 false Scaffold16335: 408313-413312 Boechera stricta
Bostr.16335s0049 5.0kb downstream 5.0kb downstream 9786 true Scaffold16335: 398527-408312 Boechera stricta
Bostr.16335s0049 5.0kb downstream 5.0kb downstream 5000 false Scaffold16335: 398527-403526 Boechera stricta
Bostr.16335s0049 10.0kb upstream 10.0kb upstream 14786 true Scaffold16335: 403527-418312 Boechera stricta
Bostr.16335s0049 10.0kb upstream 10.0kb upstream 10000 false Scaffold16335: 408313-418312 Boechera stricta
Bostr.16335s0049 10.0kb downstream 10.0kb downstream 14786 true Scaffold16335: 393527-408312 Boechera stricta
Bostr.16335s0049 10.0kb downstream 10.0kb downstream 10000 false Scaffold16335: 393527-403526 Boechera stricta

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122342187 5261 Brassicaceae Singleton cluster - no MSA
123782536 5264 Brassicales-Malvales Singleton cluster - no MSA
124280797 5266 SBM Singleton cluster - no MSA
124252379 5268 Malvidae View MSA
124062676 5270 Rosid View MSA
123736808 5271 Pentapetalae View MSA
122787445 5272 Eudicot View MSA
122041770 5273 Angiosperm View MSA
121347464 5274 Embryophyte View MSA
123426480 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain