Gene : Bostr.19424s0062 B. stricta v1.2
Defline:  (1 of 13) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  62
Name:  ? Bostr.19424s0062 Secondary Identifier:  ? PAC:30661650
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bostr.19424s0062 0.5kb upstream 0.5kb upstream 2105 true Scaffold19424: 593770-595874 Boechera stricta
Bostr.19424s0062 0.5kb upstream 0.5kb upstream 500 false Scaffold19424: 593770-594269 Boechera stricta
Bostr.19424s0062 0.5kb downstream 0.5kb downstream 2105 true Scaffold19424: 594270-596374 Boechera stricta
Bostr.19424s0062 0.5kb downstream 0.5kb downstream 500 false Scaffold19424: 595875-596374 Boechera stricta
Bostr.19424s0062 1.0kb upstream 1.0kb upstream 2605 true Scaffold19424: 593270-595874 Boechera stricta
Bostr.19424s0062 1.0kb upstream 1.0kb upstream 1000 false Scaffold19424: 593270-594269 Boechera stricta
Bostr.19424s0062 1.0kb downstream 1.0kb downstream 2605 true Scaffold19424: 594270-596874 Boechera stricta
Bostr.19424s0062 1.0kb downstream 1.0kb downstream 1000 false Scaffold19424: 595875-596874 Boechera stricta
Bostr.19424s0062 2.0kb upstream 2.0kb upstream 3605 true Scaffold19424: 592270-595874 Boechera stricta
Bostr.19424s0062 2.0kb upstream 2.0kb upstream 2000 false Scaffold19424: 592270-594269 Boechera stricta
Bostr.19424s0062 2.0kb downstream 2.0kb downstream 3605 true Scaffold19424: 594270-597874 Boechera stricta
Bostr.19424s0062 2.0kb downstream 2.0kb downstream 2000 false Scaffold19424: 595875-597874 Boechera stricta
Bostr.19424s0062 5.0kb upstream 5.0kb upstream 6605 true Scaffold19424: 589270-595874 Boechera stricta
Bostr.19424s0062 5.0kb upstream 5.0kb upstream 5000 false Scaffold19424: 589270-594269 Boechera stricta
Bostr.19424s0062 5.0kb downstream 5.0kb downstream 6605 true Scaffold19424: 594270-600874 Boechera stricta
Bostr.19424s0062 5.0kb downstream 5.0kb downstream 5000 false Scaffold19424: 595875-600874 Boechera stricta
Bostr.19424s0062 10.0kb upstream 10.0kb upstream 11605 true Scaffold19424: 584270-595874 Boechera stricta
Bostr.19424s0062 10.0kb upstream 10.0kb upstream 10000 false Scaffold19424: 584270-594269 Boechera stricta
Bostr.19424s0062 10.0kb downstream 10.0kb downstream 11605 true Scaffold19424: 594270-605874 Boechera stricta
Bostr.19424s0062 10.0kb downstream 10.0kb downstream 10000 false Scaffold19424: 595875-605874 Boechera stricta

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377012 5261 Brassicaceae View MSA
123839959 5264 Brassicales-Malvales View MSA
124345918 5266 SBM View MSA
124248769 5268 Malvidae View MSA
124074284 5270 Rosid View MSA
123751462 5271 Pentapetalae View MSA
122795351 5272 Eudicot View MSA
122048962 5273 Angiosperm View MSA
121311190 5274 Embryophyte View MSA
123348519 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain