Gene : Bostr.21554s0007 B. stricta v1.2
Defline:  (1 of 1) PTHR10108:SF708 - TOCOPHEROL O-METHYLTRANSFERASE, CHLOROPLASTIC Genomic Order:  7
Name:  ? Bostr.21554s0007 Secondary Identifier:  ? PAC:30659102
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bstricta PWY-1422 Boechera stricta pathologic  
Bstricta PWY-7436 Boechera stricta pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bostr.21554s0007 0.5kb upstream 0.5kb upstream 2820 true Scaffold21554: 89593-92412 Boechera stricta
Bostr.21554s0007 0.5kb upstream 0.5kb upstream 500 false Scaffold21554: 89593-90092 Boechera stricta
Bostr.21554s0007 0.5kb downstream 0.5kb downstream 2820 true Scaffold21554: 90093-92912 Boechera stricta
Bostr.21554s0007 0.5kb downstream 0.5kb downstream 500 false Scaffold21554: 92413-92912 Boechera stricta
Bostr.21554s0007 1.0kb upstream 1.0kb upstream 3320 true Scaffold21554: 89093-92412 Boechera stricta
Bostr.21554s0007 1.0kb upstream 1.0kb upstream 1000 false Scaffold21554: 89093-90092 Boechera stricta
Bostr.21554s0007 1.0kb downstream 1.0kb downstream 3320 true Scaffold21554: 90093-93412 Boechera stricta
Bostr.21554s0007 1.0kb downstream 1.0kb downstream 1000 false Scaffold21554: 92413-93412 Boechera stricta
Bostr.21554s0007 2.0kb upstream 2.0kb upstream 4320 true Scaffold21554: 88093-92412 Boechera stricta
Bostr.21554s0007 2.0kb upstream 2.0kb upstream 2000 false Scaffold21554: 88093-90092 Boechera stricta
Bostr.21554s0007 2.0kb downstream 2.0kb downstream 4320 true Scaffold21554: 90093-94412 Boechera stricta
Bostr.21554s0007 2.0kb downstream 2.0kb downstream 2000 false Scaffold21554: 92413-94412 Boechera stricta
Bostr.21554s0007 5.0kb upstream 5.0kb upstream 7320 true Scaffold21554: 85093-92412 Boechera stricta
Bostr.21554s0007 5.0kb upstream 5.0kb upstream 5000 false Scaffold21554: 85093-90092 Boechera stricta
Bostr.21554s0007 5.0kb downstream 5.0kb downstream 7320 true Scaffold21554: 90093-97412 Boechera stricta
Bostr.21554s0007 5.0kb downstream 5.0kb downstream 5000 false Scaffold21554: 92413-97412 Boechera stricta
Bostr.21554s0007 10.0kb upstream 10.0kb upstream 12320 true Scaffold21554: 80093-92412 Boechera stricta
Bostr.21554s0007 10.0kb upstream 10.0kb upstream 10000 false Scaffold21554: 80093-90092 Boechera stricta
Bostr.21554s0007 10.0kb downstream 10.0kb downstream 12320 true Scaffold21554: 90093-102412 Boechera stricta
Bostr.21554s0007 10.0kb downstream 10.0kb downstream 10000 false Scaffold21554: 92413-102412 Boechera stricta

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371725 5261 Brassicaceae View MSA
123839002 5264 Brassicales-Malvales View MSA
124342588 5266 SBM View MSA
124238021 5268 Malvidae View MSA
124067151 5270 Rosid View MSA
123747323 5271 Pentapetalae View MSA
122786433 5272 Eudicot View MSA
122044817 5273 Angiosperm View MSA
121347406 5274 Embryophyte View MSA
123427925 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain