Gene : Bostr.23794s0096 B. stricta v1.2
Defline:  (1 of 3) PTHR22763:SF5 - E3 UBIQUITIN-PROTEIN LIGASE CIP8 Genomic Order:  96
Name:  ? Bostr.23794s0096 Secondary Identifier:  ? PAC:30651129
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bstricta PWY-7511 Boechera stricta pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bostr.23794s0096 0.5kb upstream 0.5kb upstream 2774 true Scaffold23794: 557306-560079 Boechera stricta
Bostr.23794s0096 0.5kb upstream 0.5kb upstream 500 false Scaffold23794: 557306-557805 Boechera stricta
Bostr.23794s0096 0.5kb downstream 0.5kb downstream 2774 true Scaffold23794: 557806-560579 Boechera stricta
Bostr.23794s0096 0.5kb downstream 0.5kb downstream 500 false Scaffold23794: 560080-560579 Boechera stricta
Bostr.23794s0096 1.0kb upstream 1.0kb upstream 3274 true Scaffold23794: 556806-560079 Boechera stricta
Bostr.23794s0096 1.0kb upstream 1.0kb upstream 1000 false Scaffold23794: 556806-557805 Boechera stricta
Bostr.23794s0096 1.0kb downstream 1.0kb downstream 3274 true Scaffold23794: 557806-561079 Boechera stricta
Bostr.23794s0096 1.0kb downstream 1.0kb downstream 1000 false Scaffold23794: 560080-561079 Boechera stricta
Bostr.23794s0096 2.0kb upstream 2.0kb upstream 4274 true Scaffold23794: 555806-560079 Boechera stricta
Bostr.23794s0096 2.0kb upstream 2.0kb upstream 2000 false Scaffold23794: 555806-557805 Boechera stricta
Bostr.23794s0096 2.0kb downstream 2.0kb downstream 4274 true Scaffold23794: 557806-562079 Boechera stricta
Bostr.23794s0096 2.0kb downstream 2.0kb downstream 2000 false Scaffold23794: 560080-562079 Boechera stricta
Bostr.23794s0096 5.0kb upstream 5.0kb upstream 7274 true Scaffold23794: 552806-560079 Boechera stricta
Bostr.23794s0096 5.0kb upstream 5.0kb upstream 5000 false Scaffold23794: 552806-557805 Boechera stricta
Bostr.23794s0096 5.0kb downstream 5.0kb downstream 7274 true Scaffold23794: 557806-565079 Boechera stricta
Bostr.23794s0096 5.0kb downstream 5.0kb downstream 5000 false Scaffold23794: 560080-565079 Boechera stricta
Bostr.23794s0096 10.0kb upstream 10.0kb upstream 12274 true Scaffold23794: 547806-560079 Boechera stricta
Bostr.23794s0096 10.0kb upstream 10.0kb upstream 10000 false Scaffold23794: 547806-557805 Boechera stricta
Bostr.23794s0096 10.0kb downstream 10.0kb downstream 12274 true Scaffold23794: 557806-570079 Boechera stricta
Bostr.23794s0096 10.0kb downstream 10.0kb downstream 10000 false Scaffold23794: 560080-570079 Boechera stricta

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363386 5261 Brassicaceae View MSA
123838117 5264 Brassicales-Malvales View MSA
124341456 5266 SBM View MSA
124249586 5268 Malvidae View MSA
124073026 5270 Rosid View MSA
123745848 5271 Pentapetalae View MSA
122795555 5272 Eudicot View MSA
122050385 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121349521 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain