Gene : Bostr.22252s0374 B. stricta v1.2
Defline:  (1 of 2) PTHR23118:SF6 - ATP-CITRATE SYNTHASE BETA CHAIN PROTEIN 1 Genomic Order:  374
Name:  ? Bostr.22252s0374 Secondary Identifier:  ? PAC:30659699
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bstricta PWY-5172 Boechera stricta pathologic  
Bstricta PWY-5173 Boechera stricta pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bostr.22252s0374 0.5kb upstream 0.5kb upstream 4848 true Scaffold22252: 1601680-1606527 Boechera stricta
Bostr.22252s0374 0.5kb upstream 0.5kb upstream 500 false Scaffold22252: 1601680-1602179 Boechera stricta
Bostr.22252s0374 0.5kb downstream 0.5kb downstream 4848 true Scaffold22252: 1602180-1607027 Boechera stricta
Bostr.22252s0374 0.5kb downstream 0.5kb downstream 500 false Scaffold22252: 1606528-1607027 Boechera stricta
Bostr.22252s0374 1.0kb upstream 1.0kb upstream 5348 true Scaffold22252: 1601180-1606527 Boechera stricta
Bostr.22252s0374 1.0kb upstream 1.0kb upstream 1000 false Scaffold22252: 1601180-1602179 Boechera stricta
Bostr.22252s0374 1.0kb downstream 1.0kb downstream 5348 true Scaffold22252: 1602180-1607527 Boechera stricta
Bostr.22252s0374 1.0kb downstream 1.0kb downstream 1000 false Scaffold22252: 1606528-1607527 Boechera stricta
Bostr.22252s0374 2.0kb upstream 2.0kb upstream 6348 true Scaffold22252: 1600180-1606527 Boechera stricta
Bostr.22252s0374 2.0kb upstream 2.0kb upstream 2000 false Scaffold22252: 1600180-1602179 Boechera stricta
Bostr.22252s0374 2.0kb downstream 2.0kb downstream 6348 true Scaffold22252: 1602180-1608527 Boechera stricta
Bostr.22252s0374 2.0kb downstream 2.0kb downstream 2000 false Scaffold22252: 1606528-1608527 Boechera stricta
Bostr.22252s0374 5.0kb upstream 5.0kb upstream 9348 true Scaffold22252: 1597180-1606527 Boechera stricta
Bostr.22252s0374 5.0kb upstream 5.0kb upstream 5000 false Scaffold22252: 1597180-1602179 Boechera stricta
Bostr.22252s0374 5.0kb downstream 5.0kb downstream 9348 true Scaffold22252: 1602180-1611527 Boechera stricta
Bostr.22252s0374 5.0kb downstream 5.0kb downstream 5000 false Scaffold22252: 1606528-1611527 Boechera stricta
Bostr.22252s0374 10.0kb upstream 10.0kb upstream 14348 true Scaffold22252: 1592180-1606527 Boechera stricta
Bostr.22252s0374 10.0kb upstream 10.0kb upstream 10000 false Scaffold22252: 1592180-1602179 Boechera stricta
Bostr.22252s0374 10.0kb downstream 10.0kb downstream 14348 true Scaffold22252: 1602180-1616527 Boechera stricta
Bostr.22252s0374 10.0kb downstream 10.0kb downstream 10000 false Scaffold22252: 1606528-1616527 Boechera stricta

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376807 5261 Brassicaceae View MSA
123838155 5264 Brassicales-Malvales View MSA
124340506 5266 SBM View MSA
124250755 5268 Malvidae View MSA
124062088 5270 Rosid View MSA
123736971 5271 Pentapetalae View MSA
122787632 5272 Eudicot View MSA
122045238 5273 Angiosperm View MSA
121345896 5274 Embryophyte View MSA
123427786 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain