Gene : Bostr.24399s0049 B. stricta v1.2
Defline:  (1 of 1) 5.3.1.23 - S-methyl-5-thioribose-1-phosphate isomerase / S-methyl-5-thio-D-ribose-1-phosphate aldose-ketose-isomerase Genomic Order:  49
Name:  ? Bostr.24399s0049 Secondary Identifier:  ? PAC:30658971
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bstricta PWY-4361 Boechera stricta pathologic  
Bstricta PWY-7270 Boechera stricta pathologic  
Bstricta PWY-7528 Boechera stricta pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bostr.24399s0049 0.5kb upstream 0.5kb upstream 3050 true Scaffold24399: 793857-796906 Boechera stricta
Bostr.24399s0049 0.5kb upstream 0.5kb upstream 500 false Scaffold24399: 796407-796906 Boechera stricta
Bostr.24399s0049 0.5kb downstream 0.5kb downstream 3050 true Scaffold24399: 793357-796406 Boechera stricta
Bostr.24399s0049 0.5kb downstream 0.5kb downstream 500 false Scaffold24399: 793357-793856 Boechera stricta
Bostr.24399s0049 1.0kb upstream 1.0kb upstream 3550 true Scaffold24399: 793857-797406 Boechera stricta
Bostr.24399s0049 1.0kb upstream 1.0kb upstream 1000 false Scaffold24399: 796407-797406 Boechera stricta
Bostr.24399s0049 1.0kb downstream 1.0kb downstream 3550 true Scaffold24399: 792857-796406 Boechera stricta
Bostr.24399s0049 1.0kb downstream 1.0kb downstream 1000 false Scaffold24399: 792857-793856 Boechera stricta
Bostr.24399s0049 2.0kb upstream 2.0kb upstream 4550 true Scaffold24399: 793857-798406 Boechera stricta
Bostr.24399s0049 2.0kb upstream 2.0kb upstream 2000 false Scaffold24399: 796407-798406 Boechera stricta
Bostr.24399s0049 2.0kb downstream 2.0kb downstream 4550 true Scaffold24399: 791857-796406 Boechera stricta
Bostr.24399s0049 2.0kb downstream 2.0kb downstream 2000 false Scaffold24399: 791857-793856 Boechera stricta
Bostr.24399s0049 5.0kb upstream 5.0kb upstream 7550 true Scaffold24399: 793857-801406 Boechera stricta
Bostr.24399s0049 5.0kb upstream 5.0kb upstream 5000 false Scaffold24399: 796407-801406 Boechera stricta
Bostr.24399s0049 5.0kb downstream 5.0kb downstream 7550 true Scaffold24399: 788857-796406 Boechera stricta
Bostr.24399s0049 5.0kb downstream 5.0kb downstream 5000 false Scaffold24399: 788857-793856 Boechera stricta
Bostr.24399s0049 10.0kb upstream 10.0kb upstream 12550 true Scaffold24399: 793857-806406 Boechera stricta
Bostr.24399s0049 10.0kb upstream 10.0kb upstream 10000 false Scaffold24399: 796407-806406 Boechera stricta
Bostr.24399s0049 10.0kb downstream 10.0kb downstream 12550 true Scaffold24399: 783857-796406 Boechera stricta
Bostr.24399s0049 10.0kb downstream 10.0kb downstream 10000 false Scaffold24399: 783857-793856 Boechera stricta

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360311 5261 Brassicaceae View MSA
123829438 5264 Brassicales-Malvales View MSA
124345905 5266 SBM View MSA
124238790 5268 Malvidae View MSA
124060423 5270 Rosid View MSA
123740094 5271 Pentapetalae View MSA
122788864 5272 Eudicot View MSA
122043863 5273 Angiosperm View MSA
121310201 5274 Embryophyte View MSA
123428305 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain