Gene : Bostr.24399s0061 B. stricta v1.2
Defline:  (1 of 4) 4.2.1.3 - Aconitate hydratase / Citrate(isocitrate) hydro-lyase Genomic Order:  61
Name:  ? Bostr.24399s0061 Secondary Identifier:  ? PAC:30658998
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bstricta GLYOXYLATE-BYPASS Boechera stricta pathologic  
Bstricta PWY-5464 Boechera stricta pathologic  
Bstricta PWY-561 Boechera stricta pathologic  
Bstricta PWY-5690 Boechera stricta pathologic  
Bstricta PWY-6549 Boechera stricta pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bostr.24399s0061 0.5kb upstream 0.5kb upstream 5982 true Scaffold24399: 927867-933848 Boechera stricta
Bostr.24399s0061 0.5kb upstream 0.5kb upstream 500 false Scaffold24399: 933349-933848 Boechera stricta
Bostr.24399s0061 0.5kb downstream 0.5kb downstream 5982 true Scaffold24399: 927367-933348 Boechera stricta
Bostr.24399s0061 0.5kb downstream 0.5kb downstream 500 false Scaffold24399: 927367-927866 Boechera stricta
Bostr.24399s0061 1.0kb upstream 1.0kb upstream 6482 true Scaffold24399: 927867-934348 Boechera stricta
Bostr.24399s0061 1.0kb upstream 1.0kb upstream 1000 false Scaffold24399: 933349-934348 Boechera stricta
Bostr.24399s0061 1.0kb downstream 1.0kb downstream 6482 true Scaffold24399: 926867-933348 Boechera stricta
Bostr.24399s0061 1.0kb downstream 1.0kb downstream 1000 false Scaffold24399: 926867-927866 Boechera stricta
Bostr.24399s0061 2.0kb upstream 2.0kb upstream 7482 true Scaffold24399: 927867-935348 Boechera stricta
Bostr.24399s0061 2.0kb upstream 2.0kb upstream 2000 false Scaffold24399: 933349-935348 Boechera stricta
Bostr.24399s0061 2.0kb downstream 2.0kb downstream 7482 true Scaffold24399: 925867-933348 Boechera stricta
Bostr.24399s0061 2.0kb downstream 2.0kb downstream 2000 false Scaffold24399: 925867-927866 Boechera stricta
Bostr.24399s0061 5.0kb upstream 5.0kb upstream 10482 true Scaffold24399: 927867-938348 Boechera stricta
Bostr.24399s0061 5.0kb upstream 5.0kb upstream 5000 false Scaffold24399: 933349-938348 Boechera stricta
Bostr.24399s0061 5.0kb downstream 5.0kb downstream 10482 true Scaffold24399: 922867-933348 Boechera stricta
Bostr.24399s0061 5.0kb downstream 5.0kb downstream 5000 false Scaffold24399: 922867-927866 Boechera stricta
Bostr.24399s0061 10.0kb upstream 10.0kb upstream 15482 true Scaffold24399: 927867-943348 Boechera stricta
Bostr.24399s0061 10.0kb upstream 10.0kb upstream 10000 false Scaffold24399: 933349-943348 Boechera stricta
Bostr.24399s0061 10.0kb downstream 10.0kb downstream 15482 true Scaffold24399: 917867-933348 Boechera stricta
Bostr.24399s0061 10.0kb downstream 10.0kb downstream 10000 false Scaffold24399: 917867-927866 Boechera stricta

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360824 5261 Brassicaceae View MSA
123840370 5264 Brassicales-Malvales View MSA
124350117 5266 SBM View MSA
124253803 5268 Malvidae View MSA
124069488 5270 Rosid View MSA
123752886 5271 Pentapetalae View MSA
122795491 5272 Eudicot View MSA
122043810 5273 Angiosperm View MSA
121344247 5274 Embryophyte View MSA
123428745 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain