Gene : Bostr.25463s0141 B. stricta v1.2
Defline:  (1 of 1) 2.3.3.10 - Hydroxymethylglutaryl-CoA synthase / Hydroxymethylglutaryl coenzyme alpha-condensing enzyme Genomic Order:  141
Name:  ? Bostr.25463s0141 Secondary Identifier:  ? PAC:30679964
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bstricta PWY-5910 Boechera stricta pathologic  
Bstricta PWY-922 Boechera stricta pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bostr.25463s0141 0.5kb upstream 0.5kb upstream 3809 true Scaffold25463: 1225518-1229326 Boechera stricta
Bostr.25463s0141 0.5kb upstream 0.5kb upstream 500 false Scaffold25463: 1225518-1226017 Boechera stricta
Bostr.25463s0141 0.5kb downstream 0.5kb downstream 3809 true Scaffold25463: 1226018-1229826 Boechera stricta
Bostr.25463s0141 0.5kb downstream 0.5kb downstream 500 false Scaffold25463: 1229327-1229826 Boechera stricta
Bostr.25463s0141 1.0kb upstream 1.0kb upstream 4309 true Scaffold25463: 1225018-1229326 Boechera stricta
Bostr.25463s0141 1.0kb upstream 1.0kb upstream 1000 false Scaffold25463: 1225018-1226017 Boechera stricta
Bostr.25463s0141 1.0kb downstream 1.0kb downstream 4309 true Scaffold25463: 1226018-1230326 Boechera stricta
Bostr.25463s0141 1.0kb downstream 1.0kb downstream 1000 false Scaffold25463: 1229327-1230326 Boechera stricta
Bostr.25463s0141 2.0kb upstream 2.0kb upstream 5309 true Scaffold25463: 1224018-1229326 Boechera stricta
Bostr.25463s0141 2.0kb upstream 2.0kb upstream 2000 false Scaffold25463: 1224018-1226017 Boechera stricta
Bostr.25463s0141 2.0kb downstream 2.0kb downstream 5309 true Scaffold25463: 1226018-1231326 Boechera stricta
Bostr.25463s0141 2.0kb downstream 2.0kb downstream 2000 false Scaffold25463: 1229327-1231326 Boechera stricta
Bostr.25463s0141 5.0kb upstream 5.0kb upstream 8309 true Scaffold25463: 1221018-1229326 Boechera stricta
Bostr.25463s0141 5.0kb upstream 5.0kb upstream 5000 false Scaffold25463: 1221018-1226017 Boechera stricta
Bostr.25463s0141 5.0kb downstream 5.0kb downstream 8309 true Scaffold25463: 1226018-1234326 Boechera stricta
Bostr.25463s0141 5.0kb downstream 5.0kb downstream 5000 false Scaffold25463: 1229327-1234326 Boechera stricta
Bostr.25463s0141 10.0kb upstream 10.0kb upstream 13309 true Scaffold25463: 1216018-1229326 Boechera stricta
Bostr.25463s0141 10.0kb upstream 10.0kb upstream 10000 false Scaffold25463: 1216018-1226017 Boechera stricta
Bostr.25463s0141 10.0kb downstream 10.0kb downstream 13309 true Scaffold25463: 1226018-1239326 Boechera stricta
Bostr.25463s0141 10.0kb downstream 10.0kb downstream 10000 false Scaffold25463: 1229327-1239326 Boechera stricta

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368774 5261 Brassicaceae View MSA
123839645 5264 Brassicales-Malvales View MSA
124341389 5266 SBM View MSA
124241910 5268 Malvidae View MSA
124060634 5270 Rosid View MSA
123746885 5271 Pentapetalae View MSA
122791824 5272 Eudicot View MSA
122042701 5273 Angiosperm View MSA
121346246 5274 Embryophyte View MSA
123424795 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain