Gene : Bostr.25463s0049 B. stricta v1.2
Defline:  (1 of 2) PTHR11254//PTHR11254:SF329 - HECT DOMAIN UBIQUITIN-PROTEIN LIGASE Genomic Order:  49
Name:  ? Bostr.25463s0049 Secondary Identifier:  ? PAC:30680115
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bstricta PWY-7511 Boechera stricta pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bostr.25463s0049 0.5kb upstream 0.5kb upstream 4145 true Scaffold25463: 357990-362134 Boechera stricta
Bostr.25463s0049 0.5kb upstream 0.5kb upstream 500 false Scaffold25463: 361635-362134 Boechera stricta
Bostr.25463s0049 0.5kb downstream 0.5kb downstream 4145 true Scaffold25463: 357490-361634 Boechera stricta
Bostr.25463s0049 0.5kb downstream 0.5kb downstream 500 false Scaffold25463: 357490-357989 Boechera stricta
Bostr.25463s0049 1.0kb upstream 1.0kb upstream 4645 true Scaffold25463: 357990-362634 Boechera stricta
Bostr.25463s0049 1.0kb upstream 1.0kb upstream 1000 false Scaffold25463: 361635-362634 Boechera stricta
Bostr.25463s0049 1.0kb downstream 1.0kb downstream 4645 true Scaffold25463: 356990-361634 Boechera stricta
Bostr.25463s0049 1.0kb downstream 1.0kb downstream 1000 false Scaffold25463: 356990-357989 Boechera stricta
Bostr.25463s0049 2.0kb upstream 2.0kb upstream 5645 true Scaffold25463: 357990-363634 Boechera stricta
Bostr.25463s0049 2.0kb upstream 2.0kb upstream 2000 false Scaffold25463: 361635-363634 Boechera stricta
Bostr.25463s0049 2.0kb downstream 2.0kb downstream 5645 true Scaffold25463: 355990-361634 Boechera stricta
Bostr.25463s0049 2.0kb downstream 2.0kb downstream 2000 false Scaffold25463: 355990-357989 Boechera stricta
Bostr.25463s0049 5.0kb upstream 5.0kb upstream 8645 true Scaffold25463: 357990-366634 Boechera stricta
Bostr.25463s0049 5.0kb upstream 5.0kb upstream 5000 false Scaffold25463: 361635-366634 Boechera stricta
Bostr.25463s0049 5.0kb downstream 5.0kb downstream 8645 true Scaffold25463: 352990-361634 Boechera stricta
Bostr.25463s0049 5.0kb downstream 5.0kb downstream 5000 false Scaffold25463: 352990-357989 Boechera stricta
Bostr.25463s0049 10.0kb upstream 10.0kb upstream 13645 true Scaffold25463: 357990-371634 Boechera stricta
Bostr.25463s0049 10.0kb upstream 10.0kb upstream 10000 false Scaffold25463: 361635-371634 Boechera stricta
Bostr.25463s0049 10.0kb downstream 10.0kb downstream 13645 true Scaffold25463: 347990-361634 Boechera stricta
Bostr.25463s0049 10.0kb downstream 10.0kb downstream 10000 false Scaffold25463: 347990-357989 Boechera stricta

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374842 5261 Brassicaceae View MSA
123835538 5264 Brassicales-Malvales View MSA
124343855 5266 SBM View MSA
124239492 5268 Malvidae View MSA
124063401 5270 Rosid View MSA
123749847 5271 Pentapetalae View MSA
122786985 5272 Eudicot View MSA
122048097 5273 Angiosperm View MSA
123429069 5275 Viridiplantae View MSA
121348188 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain