Gene : Bostr.25993s0246 B. stricta v1.2
Defline:  (1 of 1) 2.5.1.19 - 3-phosphoshikimate 1-carboxyvinyltransferase / EPSP synthase Genomic Order:  246
Name:  ? Bostr.25993s0246 Secondary Identifier:  ? PAC:30667868
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bstricta ARO-PWY Boechera stricta pathologic  
Bstricta PWY-6163 Boechera stricta pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bostr.25993s0246 0.5kb upstream 0.5kb upstream 3304 true Scaffold25993: 1208908-1212211 Boechera stricta
Bostr.25993s0246 0.5kb upstream 0.5kb upstream 500 false Scaffold25993: 1211712-1212211 Boechera stricta
Bostr.25993s0246 0.5kb downstream 0.5kb downstream 3304 true Scaffold25993: 1208408-1211711 Boechera stricta
Bostr.25993s0246 0.5kb downstream 0.5kb downstream 500 false Scaffold25993: 1208408-1208907 Boechera stricta
Bostr.25993s0246 1.0kb upstream 1.0kb upstream 3804 true Scaffold25993: 1208908-1212711 Boechera stricta
Bostr.25993s0246 1.0kb upstream 1.0kb upstream 1000 false Scaffold25993: 1211712-1212711 Boechera stricta
Bostr.25993s0246 1.0kb downstream 1.0kb downstream 3804 true Scaffold25993: 1207908-1211711 Boechera stricta
Bostr.25993s0246 1.0kb downstream 1.0kb downstream 1000 false Scaffold25993: 1207908-1208907 Boechera stricta
Bostr.25993s0246 2.0kb upstream 2.0kb upstream 4804 true Scaffold25993: 1208908-1213711 Boechera stricta
Bostr.25993s0246 2.0kb upstream 2.0kb upstream 2000 false Scaffold25993: 1211712-1213711 Boechera stricta
Bostr.25993s0246 2.0kb downstream 2.0kb downstream 4804 true Scaffold25993: 1206908-1211711 Boechera stricta
Bostr.25993s0246 2.0kb downstream 2.0kb downstream 2000 false Scaffold25993: 1206908-1208907 Boechera stricta
Bostr.25993s0246 5.0kb upstream 5.0kb upstream 7804 true Scaffold25993: 1208908-1216711 Boechera stricta
Bostr.25993s0246 5.0kb upstream 5.0kb upstream 5000 false Scaffold25993: 1211712-1216711 Boechera stricta
Bostr.25993s0246 5.0kb downstream 5.0kb downstream 7804 true Scaffold25993: 1203908-1211711 Boechera stricta
Bostr.25993s0246 5.0kb downstream 5.0kb downstream 5000 false Scaffold25993: 1203908-1208907 Boechera stricta
Bostr.25993s0246 10.0kb upstream 10.0kb upstream 12804 true Scaffold25993: 1208908-1221711 Boechera stricta
Bostr.25993s0246 10.0kb upstream 10.0kb upstream 10000 false Scaffold25993: 1211712-1221711 Boechera stricta
Bostr.25993s0246 10.0kb downstream 10.0kb downstream 12804 true Scaffold25993: 1198908-1211711 Boechera stricta
Bostr.25993s0246 10.0kb downstream 10.0kb downstream 10000 false Scaffold25993: 1198908-1208907 Boechera stricta

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374730 5261 Brassicaceae View MSA
123838473 5264 Brassicales-Malvales View MSA
124341976 5266 SBM View MSA
124237707 5268 Malvidae View MSA
124067523 5270 Rosid View MSA
123738347 5271 Pentapetalae View MSA
122792138 5272 Eudicot View MSA
122041964 5273 Angiosperm View MSA
121345789 5274 Embryophyte View MSA
123424749 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain