Gene : Bostr.25993s0249 B. stricta v1.2
Defline:  (1 of 1) PTHR11735:SF12 - TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE, MITOCHONDRIAL-RELATED Genomic Order:  249
Name:  ? Bostr.25993s0249 Secondary Identifier:  ? PAC:30667446
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bstricta PWY0-1587 Boechera stricta pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bostr.25993s0249 0.5kb upstream 0.5kb upstream 3529 true Scaffold25993: 1217744-1221272 Boechera stricta
Bostr.25993s0249 0.5kb upstream 0.5kb upstream 500 false Scaffold25993: 1220773-1221272 Boechera stricta
Bostr.25993s0249 0.5kb downstream 0.5kb downstream 3529 true Scaffold25993: 1217244-1220772 Boechera stricta
Bostr.25993s0249 0.5kb downstream 0.5kb downstream 500 false Scaffold25993: 1217244-1217743 Boechera stricta
Bostr.25993s0249 1.0kb upstream 1.0kb upstream 4029 true Scaffold25993: 1217744-1221772 Boechera stricta
Bostr.25993s0249 1.0kb upstream 1.0kb upstream 1000 false Scaffold25993: 1220773-1221772 Boechera stricta
Bostr.25993s0249 1.0kb downstream 1.0kb downstream 4029 true Scaffold25993: 1216744-1220772 Boechera stricta
Bostr.25993s0249 1.0kb downstream 1.0kb downstream 1000 false Scaffold25993: 1216744-1217743 Boechera stricta
Bostr.25993s0249 2.0kb upstream 2.0kb upstream 5029 true Scaffold25993: 1217744-1222772 Boechera stricta
Bostr.25993s0249 2.0kb upstream 2.0kb upstream 2000 false Scaffold25993: 1220773-1222772 Boechera stricta
Bostr.25993s0249 2.0kb downstream 2.0kb downstream 5029 true Scaffold25993: 1215744-1220772 Boechera stricta
Bostr.25993s0249 2.0kb downstream 2.0kb downstream 2000 false Scaffold25993: 1215744-1217743 Boechera stricta
Bostr.25993s0249 5.0kb upstream 5.0kb upstream 8029 true Scaffold25993: 1217744-1225772 Boechera stricta
Bostr.25993s0249 5.0kb upstream 5.0kb upstream 5000 false Scaffold25993: 1220773-1225772 Boechera stricta
Bostr.25993s0249 5.0kb downstream 5.0kb downstream 8029 true Scaffold25993: 1212744-1220772 Boechera stricta
Bostr.25993s0249 5.0kb downstream 5.0kb downstream 5000 false Scaffold25993: 1212744-1217743 Boechera stricta
Bostr.25993s0249 10.0kb upstream 10.0kb upstream 13029 true Scaffold25993: 1217744-1230772 Boechera stricta
Bostr.25993s0249 10.0kb upstream 10.0kb upstream 10000 false Scaffold25993: 1220773-1230772 Boechera stricta
Bostr.25993s0249 10.0kb downstream 10.0kb downstream 13029 true Scaffold25993: 1207744-1220772 Boechera stricta
Bostr.25993s0249 10.0kb downstream 10.0kb downstream 10000 false Scaffold25993: 1207744-1217743 Boechera stricta

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375853 5261 Brassicaceae View MSA
123832586 5264 Brassicales-Malvales View MSA
124350646 5266 SBM View MSA
124246525 5268 Malvidae View MSA
124066071 5270 Rosid View MSA
123747951 5271 Pentapetalae View MSA
122791458 5272 Eudicot View MSA
122043416 5273 Angiosperm View MSA
121345797 5274 Embryophyte View MSA
123425080 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain