Gene : Bostr.25542s0227 B. stricta v1.2
Defline:  (1 of 1) PTHR11680:SF10 - SERINE HYDROXYMETHYLTRANSFERASE 1, MITOCHONDRIAL Genomic Order:  227
Name:  ? Bostr.25542s0227 Secondary Identifier:  ? PAC:30672379
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bstricta GLYSYN-PWY Boechera stricta pathologic  
Bstricta PWY-2161 Boechera stricta pathologic  
Bstricta PWY-3841 Boechera stricta pathologic  
Bstricta SER-GLYSYN-PWY Boechera stricta pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bostr.25542s0227 0.5kb upstream 0.5kb upstream 3803 true Scaffold25542: 979023-982825 Boechera stricta
Bostr.25542s0227 0.5kb upstream 0.5kb upstream 500 false Scaffold25542: 979023-979522 Boechera stricta
Bostr.25542s0227 0.5kb downstream 0.5kb downstream 3803 true Scaffold25542: 979523-983325 Boechera stricta
Bostr.25542s0227 0.5kb downstream 0.5kb downstream 500 false Scaffold25542: 982826-983325 Boechera stricta
Bostr.25542s0227 1.0kb upstream 1.0kb upstream 4303 true Scaffold25542: 978523-982825 Boechera stricta
Bostr.25542s0227 1.0kb upstream 1.0kb upstream 1000 false Scaffold25542: 978523-979522 Boechera stricta
Bostr.25542s0227 1.0kb downstream 1.0kb downstream 4303 true Scaffold25542: 979523-983825 Boechera stricta
Bostr.25542s0227 1.0kb downstream 1.0kb downstream 1000 false Scaffold25542: 982826-983825 Boechera stricta
Bostr.25542s0227 2.0kb upstream 2.0kb upstream 5303 true Scaffold25542: 977523-982825 Boechera stricta
Bostr.25542s0227 2.0kb upstream 2.0kb upstream 2000 false Scaffold25542: 977523-979522 Boechera stricta
Bostr.25542s0227 2.0kb downstream 2.0kb downstream 5303 true Scaffold25542: 979523-984825 Boechera stricta
Bostr.25542s0227 2.0kb downstream 2.0kb downstream 2000 false Scaffold25542: 982826-984825 Boechera stricta
Bostr.25542s0227 5.0kb upstream 5.0kb upstream 8303 true Scaffold25542: 974523-982825 Boechera stricta
Bostr.25542s0227 5.0kb upstream 5.0kb upstream 5000 false Scaffold25542: 974523-979522 Boechera stricta
Bostr.25542s0227 5.0kb downstream 5.0kb downstream 8303 true Scaffold25542: 979523-987825 Boechera stricta
Bostr.25542s0227 5.0kb downstream 5.0kb downstream 5000 false Scaffold25542: 982826-987825 Boechera stricta
Bostr.25542s0227 10.0kb upstream 10.0kb upstream 13303 true Scaffold25542: 969523-982825 Boechera stricta
Bostr.25542s0227 10.0kb upstream 10.0kb upstream 10000 false Scaffold25542: 969523-979522 Boechera stricta
Bostr.25542s0227 10.0kb downstream 10.0kb downstream 13303 true Scaffold25542: 979523-992825 Boechera stricta
Bostr.25542s0227 10.0kb downstream 10.0kb downstream 10000 false Scaffold25542: 982826-992825 Boechera stricta

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363634 5261 Brassicaceae View MSA
123832063 5264 Brassicales-Malvales View MSA
124337498 5266 SBM View MSA
124238878 5268 Malvidae View MSA
124064979 5270 Rosid View MSA
123747223 5271 Pentapetalae View MSA
122789073 5272 Eudicot View MSA
122045639 5273 Angiosperm View MSA
121346714 5274 Embryophyte View MSA
123424879 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain