Gene : Bostr.25542s0031 B. stricta v1.2
Defline:  (1 of 1) PTHR12001:SF41 - HETERODIMERIC GERANYLGERANYL PYROPHOSPHATE SYNTHASE SMALL SUBUNIT, CHLOROPLASTIC Genomic Order:  31
Name:  ? Bostr.25542s0031 Secondary Identifier:  ? PAC:30672140
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Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bstricta PWY-5120 Boechera stricta pathologic  
Bstricta PWY-5122 Boechera stricta pathologic  
Bstricta PWY-5123 Boechera stricta pathologic  
Bstricta PWY-5910 Boechera stricta pathologic  
Bstricta PWY-7709 Boechera stricta pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bostr.25542s0031 0.5kb upstream 0.5kb upstream 2049 true Scaffold25542: 119796-121844 Boechera stricta
Bostr.25542s0031 0.5kb upstream 0.5kb upstream 500 false Scaffold25542: 119796-120295 Boechera stricta
Bostr.25542s0031 0.5kb downstream 0.5kb downstream 2049 true Scaffold25542: 120296-122344 Boechera stricta
Bostr.25542s0031 0.5kb downstream 0.5kb downstream 500 false Scaffold25542: 121845-122344 Boechera stricta
Bostr.25542s0031 1.0kb upstream 1.0kb upstream 2549 true Scaffold25542: 119296-121844 Boechera stricta
Bostr.25542s0031 1.0kb upstream 1.0kb upstream 1000 false Scaffold25542: 119296-120295 Boechera stricta
Bostr.25542s0031 1.0kb downstream 1.0kb downstream 2549 true Scaffold25542: 120296-122844 Boechera stricta
Bostr.25542s0031 1.0kb downstream 1.0kb downstream 1000 false Scaffold25542: 121845-122844 Boechera stricta
Bostr.25542s0031 2.0kb upstream 2.0kb upstream 3549 true Scaffold25542: 118296-121844 Boechera stricta
Bostr.25542s0031 2.0kb upstream 2.0kb upstream 2000 false Scaffold25542: 118296-120295 Boechera stricta
Bostr.25542s0031 2.0kb downstream 2.0kb downstream 3549 true Scaffold25542: 120296-123844 Boechera stricta
Bostr.25542s0031 2.0kb downstream 2.0kb downstream 2000 false Scaffold25542: 121845-123844 Boechera stricta
Bostr.25542s0031 5.0kb upstream 5.0kb upstream 6549 true Scaffold25542: 115296-121844 Boechera stricta
Bostr.25542s0031 5.0kb upstream 5.0kb upstream 5000 false Scaffold25542: 115296-120295 Boechera stricta
Bostr.25542s0031 5.0kb downstream 5.0kb downstream 6549 true Scaffold25542: 120296-126844 Boechera stricta
Bostr.25542s0031 5.0kb downstream 5.0kb downstream 5000 false Scaffold25542: 121845-126844 Boechera stricta
Bostr.25542s0031 10.0kb upstream 10.0kb upstream 11549 true Scaffold25542: 110296-121844 Boechera stricta
Bostr.25542s0031 10.0kb upstream 10.0kb upstream 10000 false Scaffold25542: 110296-120295 Boechera stricta
Bostr.25542s0031 10.0kb downstream 10.0kb downstream 11549 true Scaffold25542: 120296-131844 Boechera stricta
Bostr.25542s0031 10.0kb downstream 10.0kb downstream 10000 false Scaffold25542: 121845-131844 Boechera stricta

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371131 5261 Brassicaceae View MSA
123833321 5264 Brassicales-Malvales View MSA
124341620 5266 SBM View MSA
124238583 5268 Malvidae View MSA
124050179 5270 Rosid View MSA
123740099 5271 Pentapetalae View MSA
122794742 5272 Eudicot View MSA
122045849 5273 Angiosperm View MSA
121310516 5274 Embryophyte View MSA
123347979 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain