Gene : Bostr.25993s0580 B. stricta v1.2
Defline:  (1 of 2) PTHR10315:SF45 - E3 UBIQUITIN-PROTEIN LIGASE Genomic Order:  580
Name:  ? Bostr.25993s0580 Secondary Identifier:  ? PAC:30667726
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bstricta PWY-7511 Boechera stricta pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bostr.25993s0580 0.5kb upstream 0.5kb upstream 3653 true Scaffold25993: 2807182-2810834 Boechera stricta
Bostr.25993s0580 0.5kb upstream 0.5kb upstream 500 false Scaffold25993: 2807182-2807681 Boechera stricta
Bostr.25993s0580 0.5kb downstream 0.5kb downstream 3653 true Scaffold25993: 2807682-2811334 Boechera stricta
Bostr.25993s0580 0.5kb downstream 0.5kb downstream 500 false Scaffold25993: 2810835-2811334 Boechera stricta
Bostr.25993s0580 1.0kb upstream 1.0kb upstream 4153 true Scaffold25993: 2806682-2810834 Boechera stricta
Bostr.25993s0580 1.0kb upstream 1.0kb upstream 1000 false Scaffold25993: 2806682-2807681 Boechera stricta
Bostr.25993s0580 1.0kb downstream 1.0kb downstream 4153 true Scaffold25993: 2807682-2811834 Boechera stricta
Bostr.25993s0580 1.0kb downstream 1.0kb downstream 1000 false Scaffold25993: 2810835-2811834 Boechera stricta
Bostr.25993s0580 2.0kb upstream 2.0kb upstream 5153 true Scaffold25993: 2805682-2810834 Boechera stricta
Bostr.25993s0580 2.0kb upstream 2.0kb upstream 2000 false Scaffold25993: 2805682-2807681 Boechera stricta
Bostr.25993s0580 2.0kb downstream 2.0kb downstream 5153 true Scaffold25993: 2807682-2812834 Boechera stricta
Bostr.25993s0580 2.0kb downstream 2.0kb downstream 2000 false Scaffold25993: 2810835-2812834 Boechera stricta
Bostr.25993s0580 5.0kb upstream 5.0kb upstream 8153 true Scaffold25993: 2802682-2810834 Boechera stricta
Bostr.25993s0580 5.0kb upstream 5.0kb upstream 5000 false Scaffold25993: 2802682-2807681 Boechera stricta
Bostr.25993s0580 5.0kb downstream 5.0kb downstream 8153 true Scaffold25993: 2807682-2815834 Boechera stricta
Bostr.25993s0580 5.0kb downstream 5.0kb downstream 5000 false Scaffold25993: 2810835-2815834 Boechera stricta
Bostr.25993s0580 10.0kb upstream 10.0kb upstream 13153 true Scaffold25993: 2797682-2810834 Boechera stricta
Bostr.25993s0580 10.0kb upstream 10.0kb upstream 10000 false Scaffold25993: 2797682-2807681 Boechera stricta
Bostr.25993s0580 10.0kb downstream 10.0kb downstream 13153 true Scaffold25993: 2807682-2820834 Boechera stricta
Bostr.25993s0580 10.0kb downstream 10.0kb downstream 10000 false Scaffold25993: 2810835-2820834 Boechera stricta

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375440 5261 Brassicaceae View MSA
123800955 5264 Brassicales-Malvales View MSA
124298307 5266 SBM View MSA
124149979 5268 Malvidae View MSA
124072834 5270 Rosid View MSA
123746623 5271 Pentapetalae View MSA
122796827 5272 Eudicot View MSA
122050638 5273 Angiosperm View MSA
121350928 5274 Embryophyte View MSA
123381939 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain