Gene : Bostr.18473s0093 B. stricta v1.2
Defline:  (1 of 1) PTHR18968:SF112 - ACETOLACTATE SYNTHASE, CHLOROPLASTIC Genomic Order:  93
Name:  ? Bostr.18473s0093 Secondary Identifier:  ? PAC:30667001
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bstricta BRANCHED-CHAIN-AA-SYN-PWY Boechera stricta pathologic  
Bstricta ILEUSYN-PWY Boechera stricta pathologic  
Bstricta PWY-3001 Boechera stricta pathologic  
Bstricta VALSYN-PWY Boechera stricta pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bostr.18473s0093 0.5kb upstream 0.5kb upstream 2853 true Scaffold18473: 470545-473397 Boechera stricta
Bostr.18473s0093 0.5kb upstream 0.5kb upstream 500 false Scaffold18473: 470545-471044 Boechera stricta
Bostr.18473s0093 0.5kb downstream 0.5kb downstream 2853 true Scaffold18473: 471045-473897 Boechera stricta
Bostr.18473s0093 0.5kb downstream 0.5kb downstream 500 false Scaffold18473: 473398-473897 Boechera stricta
Bostr.18473s0093 1.0kb upstream 1.0kb upstream 3353 true Scaffold18473: 470045-473397 Boechera stricta
Bostr.18473s0093 1.0kb upstream 1.0kb upstream 1000 false Scaffold18473: 470045-471044 Boechera stricta
Bostr.18473s0093 1.0kb downstream 1.0kb downstream 3353 true Scaffold18473: 471045-474397 Boechera stricta
Bostr.18473s0093 1.0kb downstream 1.0kb downstream 1000 false Scaffold18473: 473398-474397 Boechera stricta
Bostr.18473s0093 2.0kb upstream 2.0kb upstream 4353 true Scaffold18473: 469045-473397 Boechera stricta
Bostr.18473s0093 2.0kb upstream 2.0kb upstream 2000 false Scaffold18473: 469045-471044 Boechera stricta
Bostr.18473s0093 2.0kb downstream 2.0kb downstream 4353 true Scaffold18473: 471045-475397 Boechera stricta
Bostr.18473s0093 2.0kb downstream 2.0kb downstream 2000 false Scaffold18473: 473398-475397 Boechera stricta
Bostr.18473s0093 5.0kb upstream 5.0kb upstream 7353 true Scaffold18473: 466045-473397 Boechera stricta
Bostr.18473s0093 5.0kb upstream 5.0kb upstream 5000 false Scaffold18473: 466045-471044 Boechera stricta
Bostr.18473s0093 5.0kb downstream 5.0kb downstream 7353 true Scaffold18473: 471045-478397 Boechera stricta
Bostr.18473s0093 5.0kb downstream 5.0kb downstream 5000 false Scaffold18473: 473398-478397 Boechera stricta
Bostr.18473s0093 10.0kb upstream 10.0kb upstream 12353 true Scaffold18473: 461045-473397 Boechera stricta
Bostr.18473s0093 10.0kb upstream 10.0kb upstream 10000 false Scaffold18473: 461045-471044 Boechera stricta
Bostr.18473s0093 10.0kb downstream 10.0kb downstream 12353 true Scaffold18473: 471045-483397 Boechera stricta
Bostr.18473s0093 10.0kb downstream 10.0kb downstream 10000 false Scaffold18473: 473398-483397 Boechera stricta

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372690 5261 Brassicaceae View MSA
123838069 5264 Brassicales-Malvales View MSA
124338702 5266 SBM View MSA
124237880 5268 Malvidae View MSA
124061754 5270 Rosid View MSA
123740157 5271 Pentapetalae View MSA
122787294 5272 Eudicot View MSA
122042643 5273 Angiosperm View MSA
121346996 5274 Embryophyte View MSA
123424213 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain