Gene : Bostr.22252s0039 B. stricta v1.2
Defline:  (1 of 1) PTHR13789:SF249 - LYCOPENE BETA CYCLASE, CHLOROPLASTIC Genomic Order:  39
Name:  ? Bostr.22252s0039 Secondary Identifier:  ? PAC:30659872
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bstricta CAROTENOID-PWY Boechera stricta pathologic  
Bstricta PWY-5943 Boechera stricta pathologic  
Bstricta PWY-5947 Boechera stricta pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bostr.22252s0039 0.5kb upstream 0.5kb upstream 2006 true Scaffold22252: 198379-200384 Boechera stricta
Bostr.22252s0039 0.5kb upstream 0.5kb upstream 500 false Scaffold22252: 198379-198878 Boechera stricta
Bostr.22252s0039 0.5kb downstream 0.5kb downstream 2006 true Scaffold22252: 198879-200884 Boechera stricta
Bostr.22252s0039 0.5kb downstream 0.5kb downstream 500 false Scaffold22252: 200385-200884 Boechera stricta
Bostr.22252s0039 1.0kb upstream 1.0kb upstream 2506 true Scaffold22252: 197879-200384 Boechera stricta
Bostr.22252s0039 1.0kb upstream 1.0kb upstream 1000 false Scaffold22252: 197879-198878 Boechera stricta
Bostr.22252s0039 1.0kb downstream 1.0kb downstream 2506 true Scaffold22252: 198879-201384 Boechera stricta
Bostr.22252s0039 1.0kb downstream 1.0kb downstream 1000 false Scaffold22252: 200385-201384 Boechera stricta
Bostr.22252s0039 2.0kb upstream 2.0kb upstream 3506 true Scaffold22252: 196879-200384 Boechera stricta
Bostr.22252s0039 2.0kb upstream 2.0kb upstream 2000 false Scaffold22252: 196879-198878 Boechera stricta
Bostr.22252s0039 2.0kb downstream 2.0kb downstream 3506 true Scaffold22252: 198879-202384 Boechera stricta
Bostr.22252s0039 2.0kb downstream 2.0kb downstream 2000 false Scaffold22252: 200385-202384 Boechera stricta
Bostr.22252s0039 5.0kb upstream 5.0kb upstream 6506 true Scaffold22252: 193879-200384 Boechera stricta
Bostr.22252s0039 5.0kb upstream 5.0kb upstream 5000 false Scaffold22252: 193879-198878 Boechera stricta
Bostr.22252s0039 5.0kb downstream 5.0kb downstream 6506 true Scaffold22252: 198879-205384 Boechera stricta
Bostr.22252s0039 5.0kb downstream 5.0kb downstream 5000 false Scaffold22252: 200385-205384 Boechera stricta
Bostr.22252s0039 10.0kb upstream 10.0kb upstream 11506 true Scaffold22252: 188879-200384 Boechera stricta
Bostr.22252s0039 10.0kb upstream 10.0kb upstream 10000 false Scaffold22252: 188879-198878 Boechera stricta
Bostr.22252s0039 10.0kb downstream 10.0kb downstream 11506 true Scaffold22252: 198879-210384 Boechera stricta
Bostr.22252s0039 10.0kb downstream 10.0kb downstream 10000 false Scaffold22252: 200385-210384 Boechera stricta

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367824 5261 Brassicaceae View MSA
123832829 5264 Brassicales-Malvales View MSA
124345045 5266 SBM View MSA
124240984 5268 Malvidae View MSA
124065821 5270 Rosid View MSA
123737595 5271 Pentapetalae View MSA
122786885 5272 Eudicot View MSA
122046204 5273 Angiosperm View MSA
121345644 5274 Embryophyte View MSA
123423874 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain