Gene : Cucsa.391700 C. sativus v1.0
Defline:  (1 of 10) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  21
Name:  ? Cucsa.391700 Secondary Identifier:  ? PAC:16982963
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cucsa.391700 0.5kb upstream 0.5kb upstream 2309 true scaffold04062: 135066-137374 Cucumis sativus
Cucsa.391700 0.5kb upstream 0.5kb upstream 500 false scaffold04062: 136875-137374 Cucumis sativus
Cucsa.391700 0.5kb downstream 0.5kb downstream 2309 true scaffold04062: 134566-136874 Cucumis sativus
Cucsa.391700 0.5kb downstream 0.5kb downstream 500 false scaffold04062: 134566-135065 Cucumis sativus
Cucsa.391700 1.0kb upstream 1.0kb upstream 2809 true scaffold04062: 135066-137874 Cucumis sativus
Cucsa.391700 1.0kb upstream 1.0kb upstream 1000 false scaffold04062: 136875-137874 Cucumis sativus
Cucsa.391700 1.0kb downstream 1.0kb downstream 2809 true scaffold04062: 134066-136874 Cucumis sativus
Cucsa.391700 1.0kb downstream 1.0kb downstream 1000 false scaffold04062: 134066-135065 Cucumis sativus
Cucsa.391700 2.0kb upstream 2.0kb upstream 3809 true scaffold04062: 135066-138874 Cucumis sativus
Cucsa.391700 2.0kb upstream 2.0kb upstream 2000 false scaffold04062: 136875-138874 Cucumis sativus
Cucsa.391700 2.0kb downstream 2.0kb downstream 3809 true scaffold04062: 133066-136874 Cucumis sativus
Cucsa.391700 2.0kb downstream 2.0kb downstream 2000 false scaffold04062: 133066-135065 Cucumis sativus
Cucsa.391700 5.0kb upstream 5.0kb upstream 6809 true scaffold04062: 135066-141874 Cucumis sativus
Cucsa.391700 5.0kb upstream 5.0kb upstream 5000 false scaffold04062: 136875-141874 Cucumis sativus
Cucsa.391700 5.0kb downstream 5.0kb downstream 6809 true scaffold04062: 130066-136874 Cucumis sativus
Cucsa.391700 5.0kb downstream 5.0kb downstream 5000 false scaffold04062: 130066-135065 Cucumis sativus
Cucsa.391700 10.0kb upstream 10.0kb upstream 11809 true scaffold04062: 135066-146874 Cucumis sativus
Cucsa.391700 10.0kb upstream 10.0kb upstream 10000 false scaffold04062: 136875-146874 Cucumis sativus
Cucsa.391700 10.0kb downstream 10.0kb downstream 11809 true scaffold04062: 125066-136874 Cucumis sativus
Cucsa.391700 10.0kb downstream 10.0kb downstream 10000 false scaffold04062: 125066-135065 Cucumis sativus

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310699 5265 Fabidae View MSA
124074284 5270 Rosid View MSA
123751462 5271 Pentapetalae View MSA
122795351 5272 Eudicot View MSA
122048962 5273 Angiosperm View MSA
121311190 5274 Embryophyte View MSA
123348519 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain