Gene : Cucsa.004190 C. sativus v1.0
Defline:  (1 of 1) PTHR13789:SF249 - LYCOPENE BETA CYCLASE, CHLOROPLASTIC Genomic Order:  3
Name:  ? Cucsa.004190 Secondary Identifier:  ? PAC:16950996
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Csativus CAROTENOID-PWY Cucumis sativus pathologic  
Csativus PWY-5943 Cucumis sativus pathologic  
Csativus PWY-5947 Cucumis sativus pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cucsa.004190 0.5kb upstream 0.5kb upstream 2262 true scaffold00048: 69233-71494 Cucumis sativus
Cucsa.004190 0.5kb upstream 0.5kb upstream 500 false scaffold00048: 69233-69732 Cucumis sativus
Cucsa.004190 0.5kb downstream 0.5kb downstream 2262 true scaffold00048: 69733-71994 Cucumis sativus
Cucsa.004190 0.5kb downstream 0.5kb downstream 500 false scaffold00048: 71495-71994 Cucumis sativus
Cucsa.004190 1.0kb upstream 1.0kb upstream 2762 true scaffold00048: 68733-71494 Cucumis sativus
Cucsa.004190 1.0kb upstream 1.0kb upstream 1000 false scaffold00048: 68733-69732 Cucumis sativus
Cucsa.004190 1.0kb downstream 1.0kb downstream 2762 true scaffold00048: 69733-72494 Cucumis sativus
Cucsa.004190 1.0kb downstream 1.0kb downstream 1000 false scaffold00048: 71495-72494 Cucumis sativus
Cucsa.004190 2.0kb upstream 2.0kb upstream 3762 true scaffold00048: 67733-71494 Cucumis sativus
Cucsa.004190 2.0kb upstream 2.0kb upstream 2000 false scaffold00048: 67733-69732 Cucumis sativus
Cucsa.004190 2.0kb downstream 2.0kb downstream 3762 true scaffold00048: 69733-73494 Cucumis sativus
Cucsa.004190 2.0kb downstream 2.0kb downstream 2000 false scaffold00048: 71495-73494 Cucumis sativus
Cucsa.004190 5.0kb upstream 5.0kb upstream 6762 true scaffold00048: 64733-71494 Cucumis sativus
Cucsa.004190 5.0kb upstream 5.0kb upstream 5000 false scaffold00048: 64733-69732 Cucumis sativus
Cucsa.004190 5.0kb downstream 5.0kb downstream 6762 true scaffold00048: 69733-76494 Cucumis sativus
Cucsa.004190 5.0kb downstream 5.0kb downstream 5000 false scaffold00048: 71495-76494 Cucumis sativus
Cucsa.004190 10.0kb upstream 10.0kb upstream 11762 true scaffold00048: 59733-71494 Cucumis sativus
Cucsa.004190 10.0kb upstream 10.0kb upstream 10000 false scaffold00048: 59733-69732 Cucumis sativus
Cucsa.004190 10.0kb downstream 10.0kb downstream 11762 true scaffold00048: 69733-81494 Cucumis sativus
Cucsa.004190 10.0kb downstream 10.0kb downstream 10000 false scaffold00048: 71495-81494 Cucumis sativus

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303951 5265 Fabidae View MSA
124065821 5270 Rosid View MSA
123737595 5271 Pentapetalae View MSA
122786885 5272 Eudicot View MSA
122046204 5273 Angiosperm View MSA
121345644 5274 Embryophyte View MSA
123423874 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain