Gene : Cucsa.000690 C. sativus v1.0
Defline:  (1 of 10) PTHR11439//PTHR11439:SF127 - GAG-POL-RELATED RETROTRANSPOSON Genomic Order:  1
Name:  ? Cucsa.000690 Secondary Identifier:  ? PAC:16950874
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cucsa.000690 0.5kb upstream 0.5kb upstream 4187 true scaffold00013: 29639-33825 Cucumis sativus
Cucsa.000690 0.5kb upstream 0.5kb upstream 500 false scaffold00013: 33326-33825 Cucumis sativus
Cucsa.000690 0.5kb downstream 0.5kb downstream 4187 true scaffold00013: 29139-33325 Cucumis sativus
Cucsa.000690 0.5kb downstream 0.5kb downstream 500 false scaffold00013: 29139-29638 Cucumis sativus
Cucsa.000690 1.0kb upstream 1.0kb upstream 4687 true scaffold00013: 29639-34325 Cucumis sativus
Cucsa.000690 1.0kb upstream 1.0kb upstream 1000 false scaffold00013: 33326-34325 Cucumis sativus
Cucsa.000690 1.0kb downstream 1.0kb downstream 4687 true scaffold00013: 28639-33325 Cucumis sativus
Cucsa.000690 1.0kb downstream 1.0kb downstream 1000 false scaffold00013: 28639-29638 Cucumis sativus
Cucsa.000690 2.0kb upstream 2.0kb upstream 5687 true scaffold00013: 29639-35325 Cucumis sativus
Cucsa.000690 2.0kb upstream 2.0kb upstream 2000 false scaffold00013: 33326-35325 Cucumis sativus
Cucsa.000690 2.0kb downstream 2.0kb downstream 5687 true scaffold00013: 27639-33325 Cucumis sativus
Cucsa.000690 2.0kb downstream 2.0kb downstream 2000 false scaffold00013: 27639-29638 Cucumis sativus
Cucsa.000690 5.0kb upstream 5.0kb upstream 8687 true scaffold00013: 29639-38325 Cucumis sativus
Cucsa.000690 5.0kb upstream 5.0kb upstream 5000 false scaffold00013: 33326-38325 Cucumis sativus
Cucsa.000690 5.0kb downstream 5.0kb downstream 8687 true scaffold00013: 24639-33325 Cucumis sativus
Cucsa.000690 5.0kb downstream 5.0kb downstream 5000 false scaffold00013: 24639-29638 Cucumis sativus
Cucsa.000690 10.0kb upstream 10.0kb upstream 13687 true scaffold00013: 29639-43325 Cucumis sativus
Cucsa.000690 10.0kb upstream 10.0kb upstream 10000 false scaffold00013: 33326-43325 Cucumis sativus
Cucsa.000690 10.0kb downstream 10.0kb downstream 13687 true scaffold00013: 19639-33325 Cucumis sativus
Cucsa.000690 10.0kb downstream 10.0kb downstream 10000 false scaffold00013: 19639-29638 Cucumis sativus

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121601378 5273 Angiosperm Singleton cluster - no MSA
122231611 5265 Fabidae Singleton cluster - no MSA
123977852 5270 Rosid Singleton cluster - no MSA
123553530 5271 Pentapetalae Singleton cluster - no MSA
122588344 5272 Eudicot Singleton cluster - no MSA
120873669 5274 Embryophyte Singleton cluster - no MSA
122914560 5275 Viridiplantae Singleton cluster - no MSA

0 Rna Seq Expressions

0 Strain