Gene : Cucsa.388270 C. sativus v1.0
Defline:  (1 of 1) PTHR35772:SF1 - PHOTOSYSTEM II REACTION CENTER PROTEIN I Genomic Order:  60
Name:  ? Cucsa.388270 Secondary Identifier:  ? PAC:16982827
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Csativus PHOTOALL-PWY Cucumis sativus pathologic  
Csativus PWY-101 Cucumis sativus pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cucsa.388270 0.5kb upstream 0.5kb upstream 1030 true scaffold03967: 711930-712959 Cucumis sativus
Cucsa.388270 0.5kb upstream 0.5kb upstream 500 false scaffold03967: 712460-712959 Cucumis sativus
Cucsa.388270 0.5kb downstream 0.5kb downstream 1030 true scaffold03967: 711430-712459 Cucumis sativus
Cucsa.388270 0.5kb downstream 0.5kb downstream 500 false scaffold03967: 711430-711929 Cucumis sativus
Cucsa.388270 1.0kb upstream 1.0kb upstream 1530 true scaffold03967: 711930-713459 Cucumis sativus
Cucsa.388270 1.0kb upstream 1.0kb upstream 1000 false scaffold03967: 712460-713459 Cucumis sativus
Cucsa.388270 1.0kb downstream 1.0kb downstream 1530 true scaffold03967: 710930-712459 Cucumis sativus
Cucsa.388270 1.0kb downstream 1.0kb downstream 1000 false scaffold03967: 710930-711929 Cucumis sativus
Cucsa.388270 2.0kb upstream 2.0kb upstream 2530 true scaffold03967: 711930-714459 Cucumis sativus
Cucsa.388270 2.0kb upstream 2.0kb upstream 2000 false scaffold03967: 712460-714459 Cucumis sativus
Cucsa.388270 2.0kb downstream 2.0kb downstream 2530 true scaffold03967: 709930-712459 Cucumis sativus
Cucsa.388270 2.0kb downstream 2.0kb downstream 2000 false scaffold03967: 709930-711929 Cucumis sativus
Cucsa.388270 5.0kb upstream 5.0kb upstream 5530 true scaffold03967: 711930-717459 Cucumis sativus
Cucsa.388270 5.0kb upstream 5.0kb upstream 5000 false scaffold03967: 712460-717459 Cucumis sativus
Cucsa.388270 5.0kb downstream 5.0kb downstream 5530 true scaffold03967: 706930-712459 Cucumis sativus
Cucsa.388270 5.0kb downstream 5.0kb downstream 5000 false scaffold03967: 706930-711929 Cucumis sativus
Cucsa.388270 10.0kb upstream 10.0kb upstream 10530 true scaffold03967: 711930-722459 Cucumis sativus
Cucsa.388270 10.0kb upstream 10.0kb upstream 10000 false scaffold03967: 712460-722459 Cucumis sativus
Cucsa.388270 10.0kb downstream 10.0kb downstream 10530 true scaffold03967: 701930-712459 Cucumis sativus
Cucsa.388270 10.0kb downstream 10.0kb downstream 10000 false scaffold03967: 701930-711929 Cucumis sativus

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121606252 5273 Angiosperm Singleton cluster - no MSA
122236521 5265 Fabidae Singleton cluster - no MSA
123982731 5270 Rosid Singleton cluster - no MSA
123558406 5271 Pentapetalae Singleton cluster - no MSA
122593220 5272 Eudicot Singleton cluster - no MSA
120878542 5274 Embryophyte Singleton cluster - no MSA
122919431 5275 Viridiplantae Singleton cluster - no MSA

0 Rna Seq Expressions

0 Strain