Gene : Cucsa.047530 C. sativus v1.0
Defline:  (1 of 1) PTHR12526:SF304 - STARCH SYNTHASE 4, CHLOROPLASTIC/AMYLOPLASTIC-RELATED Genomic Order:  447
Name:  ? Cucsa.047530 Secondary Identifier:  ? PAC:16953692
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Csativus GLYCOGENSYNTH-PWY Cucumis sativus pathologic  
Csativus PWY-622 Cucumis sativus pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cucsa.047530 0.5kb upstream 0.5kb upstream 8849 true scaffold00542: 2525334-2534182 Cucumis sativus
Cucsa.047530 0.5kb upstream 0.5kb upstream 500 false scaffold00542: 2525334-2525833 Cucumis sativus
Cucsa.047530 0.5kb downstream 0.5kb downstream 8849 true scaffold00542: 2525834-2534682 Cucumis sativus
Cucsa.047530 0.5kb downstream 0.5kb downstream 500 false scaffold00542: 2534183-2534682 Cucumis sativus
Cucsa.047530 1.0kb upstream 1.0kb upstream 9349 true scaffold00542: 2524834-2534182 Cucumis sativus
Cucsa.047530 1.0kb upstream 1.0kb upstream 1000 false scaffold00542: 2524834-2525833 Cucumis sativus
Cucsa.047530 1.0kb downstream 1.0kb downstream 9349 true scaffold00542: 2525834-2535182 Cucumis sativus
Cucsa.047530 1.0kb downstream 1.0kb downstream 1000 false scaffold00542: 2534183-2535182 Cucumis sativus
Cucsa.047530 2.0kb upstream 2.0kb upstream 10349 true scaffold00542: 2523834-2534182 Cucumis sativus
Cucsa.047530 2.0kb upstream 2.0kb upstream 2000 false scaffold00542: 2523834-2525833 Cucumis sativus
Cucsa.047530 2.0kb downstream 2.0kb downstream 10349 true scaffold00542: 2525834-2536182 Cucumis sativus
Cucsa.047530 2.0kb downstream 2.0kb downstream 2000 false scaffold00542: 2534183-2536182 Cucumis sativus
Cucsa.047530 5.0kb upstream 5.0kb upstream 13349 true scaffold00542: 2520834-2534182 Cucumis sativus
Cucsa.047530 5.0kb upstream 5.0kb upstream 5000 false scaffold00542: 2520834-2525833 Cucumis sativus
Cucsa.047530 5.0kb downstream 5.0kb downstream 13349 true scaffold00542: 2525834-2539182 Cucumis sativus
Cucsa.047530 5.0kb downstream 5.0kb downstream 5000 false scaffold00542: 2534183-2539182 Cucumis sativus
Cucsa.047530 10.0kb upstream 10.0kb upstream 18349 true scaffold00542: 2515834-2534182 Cucumis sativus
Cucsa.047530 10.0kb upstream 10.0kb upstream 10000 false scaffold00542: 2515834-2525833 Cucumis sativus
Cucsa.047530 10.0kb downstream 10.0kb downstream 18349 true scaffold00542: 2525834-2544182 Cucumis sativus
Cucsa.047530 10.0kb downstream 10.0kb downstream 10000 false scaffold00542: 2534183-2544182 Cucumis sativus

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301752 5265 Fabidae View MSA
124062542 5270 Rosid View MSA
123737586 5271 Pentapetalae View MSA
122786746 5272 Eudicot View MSA
122042885 5273 Angiosperm View MSA
121344527 5274 Embryophyte View MSA
123428648 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain