Gene : Cucsa.012740 C. sativus v1.0
Defline:  (1 of 1) 2.3.3.13 - 2-isopropylmalate synthase / Isopropylmalate synthetase Genomic Order:  28
Name:  ? Cucsa.012740 Secondary Identifier:  ? PAC:16951557
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Csativus BRANCHED-CHAIN-AA-SYN-PWY Cucumis sativus pathologic  
Csativus LEUSYN-PWY Cucumis sativus pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cucsa.012740 0.5kb upstream 0.5kb upstream 10560 true scaffold00164: 465025-475584 Cucumis sativus
Cucsa.012740 0.5kb upstream 0.5kb upstream 500 false scaffold00164: 475085-475584 Cucumis sativus
Cucsa.012740 0.5kb downstream 0.5kb downstream 10560 true scaffold00164: 464525-475084 Cucumis sativus
Cucsa.012740 0.5kb downstream 0.5kb downstream 500 false scaffold00164: 464525-465024 Cucumis sativus
Cucsa.012740 1.0kb upstream 1.0kb upstream 11060 true scaffold00164: 465025-476084 Cucumis sativus
Cucsa.012740 1.0kb upstream 1.0kb upstream 1000 false scaffold00164: 475085-476084 Cucumis sativus
Cucsa.012740 1.0kb downstream 1.0kb downstream 11060 true scaffold00164: 464025-475084 Cucumis sativus
Cucsa.012740 1.0kb downstream 1.0kb downstream 1000 false scaffold00164: 464025-465024 Cucumis sativus
Cucsa.012740 2.0kb upstream 2.0kb upstream 12060 true scaffold00164: 465025-477084 Cucumis sativus
Cucsa.012740 2.0kb upstream 2.0kb upstream 2000 false scaffold00164: 475085-477084 Cucumis sativus
Cucsa.012740 2.0kb downstream 2.0kb downstream 12060 true scaffold00164: 463025-475084 Cucumis sativus
Cucsa.012740 2.0kb downstream 2.0kb downstream 2000 false scaffold00164: 463025-465024 Cucumis sativus
Cucsa.012740 5.0kb upstream 5.0kb upstream 15060 true scaffold00164: 465025-480084 Cucumis sativus
Cucsa.012740 5.0kb upstream 5.0kb upstream 5000 false scaffold00164: 475085-480084 Cucumis sativus
Cucsa.012740 5.0kb downstream 5.0kb downstream 15060 true scaffold00164: 460025-475084 Cucumis sativus
Cucsa.012740 5.0kb downstream 5.0kb downstream 5000 false scaffold00164: 460025-465024 Cucumis sativus
Cucsa.012740 10.0kb upstream 10.0kb upstream 20060 true scaffold00164: 465025-485084 Cucumis sativus
Cucsa.012740 10.0kb upstream 10.0kb upstream 10000 false scaffold00164: 475085-485084 Cucumis sativus
Cucsa.012740 10.0kb downstream 10.0kb downstream 20060 true scaffold00164: 455025-475084 Cucumis sativus
Cucsa.012740 10.0kb downstream 10.0kb downstream 10000 false scaffold00164: 455025-465024 Cucumis sativus

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305643 5265 Fabidae View MSA
124073887 5270 Rosid View MSA
123749835 5271 Pentapetalae View MSA
122795041 5272 Eudicot View MSA
122042075 5273 Angiosperm View MSA
121343846 5274 Embryophyte View MSA
123424493 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain