Gene : Cucsa.078830 C. sativus v1.0
Defline:  (1 of 8) PF07727//PF14244 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_2) // gag-polypeptide of LTR copia-type (UBN2_3) Genomic Order:  96
Name:  ? Cucsa.078830 Secondary Identifier:  ? PAC:16956142
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cucsa.078830 0.5kb upstream 0.5kb upstream 4463 true scaffold00793: 1329790-1334252 Cucumis sativus
Cucsa.078830 0.5kb upstream 0.5kb upstream 500 false scaffold00793: 1329790-1330289 Cucumis sativus
Cucsa.078830 0.5kb downstream 0.5kb downstream 4463 true scaffold00793: 1330290-1334752 Cucumis sativus
Cucsa.078830 0.5kb downstream 0.5kb downstream 500 false scaffold00793: 1334253-1334752 Cucumis sativus
Cucsa.078830 1.0kb upstream 1.0kb upstream 4963 true scaffold00793: 1329290-1334252 Cucumis sativus
Cucsa.078830 1.0kb upstream 1.0kb upstream 1000 false scaffold00793: 1329290-1330289 Cucumis sativus
Cucsa.078830 1.0kb downstream 1.0kb downstream 4963 true scaffold00793: 1330290-1335252 Cucumis sativus
Cucsa.078830 1.0kb downstream 1.0kb downstream 1000 false scaffold00793: 1334253-1335252 Cucumis sativus
Cucsa.078830 2.0kb upstream 2.0kb upstream 5963 true scaffold00793: 1328290-1334252 Cucumis sativus
Cucsa.078830 2.0kb upstream 2.0kb upstream 2000 false scaffold00793: 1328290-1330289 Cucumis sativus
Cucsa.078830 2.0kb downstream 2.0kb downstream 5963 true scaffold00793: 1330290-1336252 Cucumis sativus
Cucsa.078830 2.0kb downstream 2.0kb downstream 2000 false scaffold00793: 1334253-1336252 Cucumis sativus
Cucsa.078830 5.0kb upstream 5.0kb upstream 8963 true scaffold00793: 1325290-1334252 Cucumis sativus
Cucsa.078830 5.0kb upstream 5.0kb upstream 5000 false scaffold00793: 1325290-1330289 Cucumis sativus
Cucsa.078830 5.0kb downstream 5.0kb downstream 8963 true scaffold00793: 1330290-1339252 Cucumis sativus
Cucsa.078830 5.0kb downstream 5.0kb downstream 5000 false scaffold00793: 1334253-1339252 Cucumis sativus
Cucsa.078830 10.0kb upstream 10.0kb upstream 13963 true scaffold00793: 1320290-1334252 Cucumis sativus
Cucsa.078830 10.0kb upstream 10.0kb upstream 10000 false scaffold00793: 1320290-1330289 Cucumis sativus
Cucsa.078830 10.0kb downstream 10.0kb downstream 13963 true scaffold00793: 1330290-1344252 Cucumis sativus
Cucsa.078830 10.0kb downstream 10.0kb downstream 10000 false scaffold00793: 1334253-1344252 Cucumis sativus

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121602306 5273 Angiosperm Singleton cluster - no MSA
122232547 5265 Fabidae Singleton cluster - no MSA
123978781 5270 Rosid Singleton cluster - no MSA
123554458 5271 Pentapetalae Singleton cluster - no MSA
122589272 5272 Eudicot Singleton cluster - no MSA
120874597 5274 Embryophyte Singleton cluster - no MSA
122915488 5275 Viridiplantae Singleton cluster - no MSA

0 Rna Seq Expressions

0 Strain