Gene : Cucsa.088550 C. sativus v1.0
Defline:  (1 of 2) 6.1.1.21 - Histidine--tRNA ligase / Histidyl-tRNA synthetase Genomic Order:  108
Name:  ? Cucsa.088550 Secondary Identifier:  ? PAC:16957023
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Csativus TRNA-CHARGING-PWY Cucumis sativus pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cucsa.088550 0.5kb upstream 0.5kb upstream 6795 true scaffold00888: 827761-834555 Cucumis sativus
Cucsa.088550 0.5kb upstream 0.5kb upstream 500 false scaffold00888: 834056-834555 Cucumis sativus
Cucsa.088550 0.5kb downstream 0.5kb downstream 6795 true scaffold00888: 827261-834055 Cucumis sativus
Cucsa.088550 0.5kb downstream 0.5kb downstream 500 false scaffold00888: 827261-827760 Cucumis sativus
Cucsa.088550 1.0kb upstream 1.0kb upstream 7295 true scaffold00888: 827761-835055 Cucumis sativus
Cucsa.088550 1.0kb upstream 1.0kb upstream 1000 false scaffold00888: 834056-835055 Cucumis sativus
Cucsa.088550 1.0kb downstream 1.0kb downstream 7295 true scaffold00888: 826761-834055 Cucumis sativus
Cucsa.088550 1.0kb downstream 1.0kb downstream 1000 false scaffold00888: 826761-827760 Cucumis sativus
Cucsa.088550 2.0kb upstream 2.0kb upstream 8295 true scaffold00888: 827761-836055 Cucumis sativus
Cucsa.088550 2.0kb upstream 2.0kb upstream 2000 false scaffold00888: 834056-836055 Cucumis sativus
Cucsa.088550 2.0kb downstream 2.0kb downstream 8295 true scaffold00888: 825761-834055 Cucumis sativus
Cucsa.088550 2.0kb downstream 2.0kb downstream 2000 false scaffold00888: 825761-827760 Cucumis sativus
Cucsa.088550 5.0kb upstream 5.0kb upstream 11295 true scaffold00888: 827761-839055 Cucumis sativus
Cucsa.088550 5.0kb upstream 5.0kb upstream 5000 false scaffold00888: 834056-839055 Cucumis sativus
Cucsa.088550 5.0kb downstream 5.0kb downstream 11295 true scaffold00888: 822761-834055 Cucumis sativus
Cucsa.088550 5.0kb downstream 5.0kb downstream 5000 false scaffold00888: 822761-827760 Cucumis sativus
Cucsa.088550 10.0kb upstream 10.0kb upstream 16295 true scaffold00888: 827761-844055 Cucumis sativus
Cucsa.088550 10.0kb upstream 10.0kb upstream 10000 false scaffold00888: 834056-844055 Cucumis sativus
Cucsa.088550 10.0kb downstream 10.0kb downstream 16295 true scaffold00888: 817761-834055 Cucumis sativus
Cucsa.088550 10.0kb downstream 10.0kb downstream 10000 false scaffold00888: 817761-827760 Cucumis sativus

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307424 5265 Fabidae View MSA
124074510 5270 Rosid View MSA
123750553 5271 Pentapetalae View MSA
122793881 5272 Eudicot View MSA
122047537 5273 Angiosperm View MSA
121349127 5274 Embryophyte View MSA
123427860 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain