Gene : Cucsa.049590 C. sativus v1.0
Defline:  (1 of 1) PTHR11451//PTHR11451:SF6 - TRNA SYNTHETASE-RELATED Genomic Order:  10
Name:  ? Cucsa.049590 Secondary Identifier:  ? PAC:16954009
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Csativus TRNA-CHARGING-PWY Cucumis sativus pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cucsa.049590 0.5kb upstream 0.5kb upstream 8472 true scaffold00550: 61786-70257 Cucumis sativus
Cucsa.049590 0.5kb upstream 0.5kb upstream 500 false scaffold00550: 61786-62285 Cucumis sativus
Cucsa.049590 0.5kb downstream 0.5kb downstream 8472 true scaffold00550: 62286-70757 Cucumis sativus
Cucsa.049590 0.5kb downstream 0.5kb downstream 500 false scaffold00550: 70258-70757 Cucumis sativus
Cucsa.049590 1.0kb upstream 1.0kb upstream 8972 true scaffold00550: 61286-70257 Cucumis sativus
Cucsa.049590 1.0kb upstream 1.0kb upstream 1000 false scaffold00550: 61286-62285 Cucumis sativus
Cucsa.049590 1.0kb downstream 1.0kb downstream 8972 true scaffold00550: 62286-71257 Cucumis sativus
Cucsa.049590 1.0kb downstream 1.0kb downstream 1000 false scaffold00550: 70258-71257 Cucumis sativus
Cucsa.049590 2.0kb upstream 2.0kb upstream 9972 true scaffold00550: 60286-70257 Cucumis sativus
Cucsa.049590 2.0kb upstream 2.0kb upstream 2000 false scaffold00550: 60286-62285 Cucumis sativus
Cucsa.049590 2.0kb downstream 2.0kb downstream 9972 true scaffold00550: 62286-72257 Cucumis sativus
Cucsa.049590 2.0kb downstream 2.0kb downstream 2000 false scaffold00550: 70258-72257 Cucumis sativus
Cucsa.049590 5.0kb upstream 5.0kb upstream 12972 true scaffold00550: 57286-70257 Cucumis sativus
Cucsa.049590 5.0kb upstream 5.0kb upstream 5000 false scaffold00550: 57286-62285 Cucumis sativus
Cucsa.049590 5.0kb downstream 5.0kb downstream 12972 true scaffold00550: 62286-75257 Cucumis sativus
Cucsa.049590 5.0kb downstream 5.0kb downstream 5000 false scaffold00550: 70258-75257 Cucumis sativus
Cucsa.049590 10.0kb upstream 10.0kb upstream 17972 true scaffold00550: 52286-70257 Cucumis sativus
Cucsa.049590 10.0kb upstream 10.0kb upstream 10000 false scaffold00550: 52286-62285 Cucumis sativus
Cucsa.049590 10.0kb downstream 10.0kb downstream 17972 true scaffold00550: 62286-80257 Cucumis sativus
Cucsa.049590 10.0kb downstream 10.0kb downstream 10000 false scaffold00550: 70258-80257 Cucumis sativus

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308637 5265 Fabidae View MSA
124067863 5270 Rosid View MSA
123737640 5271 Pentapetalae View MSA
122793581 5272 Eudicot View MSA
122044069 5273 Angiosperm View MSA
121345199 5274 Embryophyte View MSA
123428629 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain