Gene : Cucsa.101660 C. sativus v1.0
Defline:  (1 of 2) PTHR21087:SF8 - SHIKIMATE KINASE 1, CHLOROPLASTIC-RELATED Genomic Order:  93
Name:  ? Cucsa.101660 Secondary Identifier:  ? PAC:16958732
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Csativus ARO-PWY Cucumis sativus pathologic  
Csativus PWY-6163 Cucumis sativus pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cucsa.101660 0.5kb upstream 0.5kb upstream 6436 true scaffold00927: 887719-894154 Cucumis sativus
Cucsa.101660 0.5kb upstream 0.5kb upstream 500 false scaffold00927: 887719-888218 Cucumis sativus
Cucsa.101660 0.5kb downstream 0.5kb downstream 6436 true scaffold00927: 888219-894654 Cucumis sativus
Cucsa.101660 0.5kb downstream 0.5kb downstream 500 false scaffold00927: 894155-894654 Cucumis sativus
Cucsa.101660 1.0kb upstream 1.0kb upstream 6936 true scaffold00927: 887219-894154 Cucumis sativus
Cucsa.101660 1.0kb upstream 1.0kb upstream 1000 false scaffold00927: 887219-888218 Cucumis sativus
Cucsa.101660 1.0kb downstream 1.0kb downstream 6936 true scaffold00927: 888219-895154 Cucumis sativus
Cucsa.101660 1.0kb downstream 1.0kb downstream 1000 false scaffold00927: 894155-895154 Cucumis sativus
Cucsa.101660 2.0kb upstream 2.0kb upstream 7936 true scaffold00927: 886219-894154 Cucumis sativus
Cucsa.101660 2.0kb upstream 2.0kb upstream 2000 false scaffold00927: 886219-888218 Cucumis sativus
Cucsa.101660 2.0kb downstream 2.0kb downstream 7936 true scaffold00927: 888219-896154 Cucumis sativus
Cucsa.101660 2.0kb downstream 2.0kb downstream 2000 false scaffold00927: 894155-896154 Cucumis sativus
Cucsa.101660 5.0kb upstream 5.0kb upstream 10936 true scaffold00927: 883219-894154 Cucumis sativus
Cucsa.101660 5.0kb upstream 5.0kb upstream 5000 false scaffold00927: 883219-888218 Cucumis sativus
Cucsa.101660 5.0kb downstream 5.0kb downstream 10936 true scaffold00927: 888219-899154 Cucumis sativus
Cucsa.101660 5.0kb downstream 5.0kb downstream 5000 false scaffold00927: 894155-899154 Cucumis sativus
Cucsa.101660 10.0kb upstream 10.0kb upstream 15936 true scaffold00927: 878219-894154 Cucumis sativus
Cucsa.101660 10.0kb upstream 10.0kb upstream 10000 false scaffold00927: 878219-888218 Cucumis sativus
Cucsa.101660 10.0kb downstream 10.0kb downstream 15936 true scaffold00927: 888219-904154 Cucumis sativus
Cucsa.101660 10.0kb downstream 10.0kb downstream 10000 false scaffold00927: 894155-904154 Cucumis sativus

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301423 5265 Fabidae View MSA
124073160 5270 Rosid View MSA
123746904 5271 Pentapetalae View MSA
122797267 5272 Eudicot View MSA
122046124 5273 Angiosperm View MSA
121349272 5274 Embryophyte View MSA
123425467 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain