Gene : Cucsa.173570 C. sativus v1.0
Defline:  (1 of 1) PTHR31480:SF2 - PHYTOENE SYNTHASE, CHLOROPLASTIC Genomic Order:  16
Name:  ? Cucsa.173570 Secondary Identifier:  ? PAC:16966633
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Csativus CAROTENOID-PWY Cucumis sativus pathologic  
Csativus PWY-6475 Cucumis sativus pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cucsa.173570 0.5kb upstream 0.5kb upstream 3889 true scaffold01209: 280107-283995 Cucumis sativus
Cucsa.173570 0.5kb upstream 0.5kb upstream 500 false scaffold01209: 280107-280606 Cucumis sativus
Cucsa.173570 0.5kb downstream 0.5kb downstream 3889 true scaffold01209: 280607-284495 Cucumis sativus
Cucsa.173570 0.5kb downstream 0.5kb downstream 500 false scaffold01209: 283996-284495 Cucumis sativus
Cucsa.173570 1.0kb upstream 1.0kb upstream 4389 true scaffold01209: 279607-283995 Cucumis sativus
Cucsa.173570 1.0kb upstream 1.0kb upstream 1000 false scaffold01209: 279607-280606 Cucumis sativus
Cucsa.173570 1.0kb downstream 1.0kb downstream 4389 true scaffold01209: 280607-284995 Cucumis sativus
Cucsa.173570 1.0kb downstream 1.0kb downstream 1000 false scaffold01209: 283996-284995 Cucumis sativus
Cucsa.173570 2.0kb upstream 2.0kb upstream 5389 true scaffold01209: 278607-283995 Cucumis sativus
Cucsa.173570 2.0kb upstream 2.0kb upstream 2000 false scaffold01209: 278607-280606 Cucumis sativus
Cucsa.173570 2.0kb downstream 2.0kb downstream 5389 true scaffold01209: 280607-285995 Cucumis sativus
Cucsa.173570 2.0kb downstream 2.0kb downstream 2000 false scaffold01209: 283996-285995 Cucumis sativus
Cucsa.173570 5.0kb upstream 5.0kb upstream 8389 true scaffold01209: 275607-283995 Cucumis sativus
Cucsa.173570 5.0kb upstream 5.0kb upstream 5000 false scaffold01209: 275607-280606 Cucumis sativus
Cucsa.173570 5.0kb downstream 5.0kb downstream 8389 true scaffold01209: 280607-288995 Cucumis sativus
Cucsa.173570 5.0kb downstream 5.0kb downstream 5000 false scaffold01209: 283996-288995 Cucumis sativus
Cucsa.173570 10.0kb upstream 10.0kb upstream 13389 true scaffold01209: 270607-283995 Cucumis sativus
Cucsa.173570 10.0kb upstream 10.0kb upstream 10000 false scaffold01209: 270607-280606 Cucumis sativus
Cucsa.173570 10.0kb downstream 10.0kb downstream 13389 true scaffold01209: 280607-293995 Cucumis sativus
Cucsa.173570 10.0kb downstream 10.0kb downstream 10000 false scaffold01209: 283996-293995 Cucumis sativus

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041269 5273 Angiosperm View MSA
122301582 5265 Fabidae View MSA
124069921 5270 Rosid View MSA
123743557 5271 Pentapetalae View MSA
122795955 5272 Eudicot View MSA
121345575 5274 Embryophyte View MSA
123426823 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain