Gene : Cucsa.148780 C. sativus v1.0
Defline:  (1 of 1) PTHR32098:SF5 - LYCOPENE BETA/EPSILON CYCLASE PROTEIN Genomic Order:  125
Name:  ? Cucsa.148780 Secondary Identifier:  ? PAC:16964200
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Csativus CAROTENOID-PWY Cucumis sativus pathologic  
Csativus PWY-5943 Cucumis sativus pathologic  
Csativus PWY-5947 Cucumis sativus pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cucsa.148780 0.5kb upstream 0.5kb upstream 5915 true scaffold01107: 777211-783125 Cucumis sativus
Cucsa.148780 0.5kb upstream 0.5kb upstream 500 false scaffold01107: 782626-783125 Cucumis sativus
Cucsa.148780 0.5kb downstream 0.5kb downstream 5915 true scaffold01107: 776711-782625 Cucumis sativus
Cucsa.148780 0.5kb downstream 0.5kb downstream 500 false scaffold01107: 776711-777210 Cucumis sativus
Cucsa.148780 1.0kb upstream 1.0kb upstream 6415 true scaffold01107: 777211-783625 Cucumis sativus
Cucsa.148780 1.0kb upstream 1.0kb upstream 1000 false scaffold01107: 782626-783625 Cucumis sativus
Cucsa.148780 1.0kb downstream 1.0kb downstream 6415 true scaffold01107: 776211-782625 Cucumis sativus
Cucsa.148780 1.0kb downstream 1.0kb downstream 1000 false scaffold01107: 776211-777210 Cucumis sativus
Cucsa.148780 2.0kb upstream 2.0kb upstream 7415 true scaffold01107: 777211-784625 Cucumis sativus
Cucsa.148780 2.0kb upstream 2.0kb upstream 2000 false scaffold01107: 782626-784625 Cucumis sativus
Cucsa.148780 2.0kb downstream 2.0kb downstream 7415 true scaffold01107: 775211-782625 Cucumis sativus
Cucsa.148780 2.0kb downstream 2.0kb downstream 2000 false scaffold01107: 775211-777210 Cucumis sativus
Cucsa.148780 5.0kb upstream 5.0kb upstream 10415 true scaffold01107: 777211-787625 Cucumis sativus
Cucsa.148780 5.0kb upstream 5.0kb upstream 5000 false scaffold01107: 782626-787625 Cucumis sativus
Cucsa.148780 5.0kb downstream 5.0kb downstream 10415 true scaffold01107: 772211-782625 Cucumis sativus
Cucsa.148780 5.0kb downstream 5.0kb downstream 5000 false scaffold01107: 772211-777210 Cucumis sativus
Cucsa.148780 10.0kb upstream 10.0kb upstream 15415 true scaffold01107: 777211-792625 Cucumis sativus
Cucsa.148780 10.0kb upstream 10.0kb upstream 10000 false scaffold01107: 782626-792625 Cucumis sativus
Cucsa.148780 10.0kb downstream 10.0kb downstream 15415 true scaffold01107: 767211-782625 Cucumis sativus
Cucsa.148780 10.0kb downstream 10.0kb downstream 10000 false scaffold01107: 767211-777210 Cucumis sativus

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307883 5265 Fabidae View MSA
124061081 5270 Rosid View MSA
123739346 5271 Pentapetalae View MSA
122787287 5272 Eudicot View MSA
122042056 5273 Angiosperm View MSA
121350076 5274 Embryophyte View MSA
123425500 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain