Gene : Cucsa.271890 C. sativus v1.0
Defline:  (1 of 2) 4.2.1.70//5.4.99.12 - Pseudouridylate synthase / Uracil hydrolyase // tRNA pseudouridine(38-40) synthase / tRNA pseudouridylate synthase I Genomic Order:  86
Name:  ? Cucsa.271890 Secondary Identifier:  ? PAC:16973624
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Csativus PWY-6019 Cucumis sativus pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cucsa.271890 0.5kb upstream 0.5kb upstream 2390 true scaffold02500: 654446-656835 Cucumis sativus
Cucsa.271890 0.5kb upstream 0.5kb upstream 500 false scaffold02500: 656336-656835 Cucumis sativus
Cucsa.271890 0.5kb downstream 0.5kb downstream 2390 true scaffold02500: 653946-656335 Cucumis sativus
Cucsa.271890 0.5kb downstream 0.5kb downstream 500 false scaffold02500: 653946-654445 Cucumis sativus
Cucsa.271890 1.0kb upstream 1.0kb upstream 2890 true scaffold02500: 654446-657335 Cucumis sativus
Cucsa.271890 1.0kb upstream 1.0kb upstream 1000 false scaffold02500: 656336-657335 Cucumis sativus
Cucsa.271890 1.0kb downstream 1.0kb downstream 2890 true scaffold02500: 653446-656335 Cucumis sativus
Cucsa.271890 1.0kb downstream 1.0kb downstream 1000 false scaffold02500: 653446-654445 Cucumis sativus
Cucsa.271890 2.0kb upstream 2.0kb upstream 3890 true scaffold02500: 654446-658335 Cucumis sativus
Cucsa.271890 2.0kb upstream 2.0kb upstream 2000 false scaffold02500: 656336-658335 Cucumis sativus
Cucsa.271890 2.0kb downstream 2.0kb downstream 3890 true scaffold02500: 652446-656335 Cucumis sativus
Cucsa.271890 2.0kb downstream 2.0kb downstream 2000 false scaffold02500: 652446-654445 Cucumis sativus
Cucsa.271890 5.0kb upstream 5.0kb upstream 6890 true scaffold02500: 654446-661335 Cucumis sativus
Cucsa.271890 5.0kb upstream 5.0kb upstream 5000 false scaffold02500: 656336-661335 Cucumis sativus
Cucsa.271890 5.0kb downstream 5.0kb downstream 6890 true scaffold02500: 649446-656335 Cucumis sativus
Cucsa.271890 5.0kb downstream 5.0kb downstream 5000 false scaffold02500: 649446-654445 Cucumis sativus
Cucsa.271890 10.0kb upstream 10.0kb upstream 11890 true scaffold02500: 654446-666335 Cucumis sativus
Cucsa.271890 10.0kb upstream 10.0kb upstream 10000 false scaffold02500: 656336-666335 Cucumis sativus
Cucsa.271890 10.0kb downstream 10.0kb downstream 11890 true scaffold02500: 644446-656335 Cucumis sativus
Cucsa.271890 10.0kb downstream 10.0kb downstream 10000 false scaffold02500: 644446-654445 Cucumis sativus

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305842 5265 Fabidae View MSA
124062436 5270 Rosid View MSA
123743490 5271 Pentapetalae View MSA
122793573 5272 Eudicot View MSA
122043730 5273 Angiosperm View MSA
121347551 5274 Embryophyte View MSA
123427150 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain