Gene : Cucsa.355970 C. sativus v1.0
Defline:  (1 of 5) PF00665//PF07727 - Integrase core domain (rve) // Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_2) Genomic Order:  42
Name:  ? Cucsa.355970 Secondary Identifier:  ? PAC:16980243
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cucsa.355970 0.5kb upstream 0.5kb upstream 2937 true scaffold03577: 664868-667804 Cucumis sativus
Cucsa.355970 0.5kb upstream 0.5kb upstream 500 false scaffold03577: 667305-667804 Cucumis sativus
Cucsa.355970 0.5kb downstream 0.5kb downstream 2937 true scaffold03577: 664368-667304 Cucumis sativus
Cucsa.355970 0.5kb downstream 0.5kb downstream 500 false scaffold03577: 664368-664867 Cucumis sativus
Cucsa.355970 1.0kb upstream 1.0kb upstream 3437 true scaffold03577: 664868-668304 Cucumis sativus
Cucsa.355970 1.0kb upstream 1.0kb upstream 1000 false scaffold03577: 667305-668304 Cucumis sativus
Cucsa.355970 1.0kb downstream 1.0kb downstream 3437 true scaffold03577: 663868-667304 Cucumis sativus
Cucsa.355970 1.0kb downstream 1.0kb downstream 1000 false scaffold03577: 663868-664867 Cucumis sativus
Cucsa.355970 2.0kb upstream 2.0kb upstream 4437 true scaffold03577: 664868-669304 Cucumis sativus
Cucsa.355970 2.0kb upstream 2.0kb upstream 2000 false scaffold03577: 667305-669304 Cucumis sativus
Cucsa.355970 2.0kb downstream 2.0kb downstream 4437 true scaffold03577: 662868-667304 Cucumis sativus
Cucsa.355970 2.0kb downstream 2.0kb downstream 2000 false scaffold03577: 662868-664867 Cucumis sativus
Cucsa.355970 5.0kb upstream 5.0kb upstream 7437 true scaffold03577: 664868-672304 Cucumis sativus
Cucsa.355970 5.0kb upstream 5.0kb upstream 5000 false scaffold03577: 667305-672304 Cucumis sativus
Cucsa.355970 5.0kb downstream 5.0kb downstream 7437 true scaffold03577: 659868-667304 Cucumis sativus
Cucsa.355970 5.0kb downstream 5.0kb downstream 5000 false scaffold03577: 659868-664867 Cucumis sativus
Cucsa.355970 10.0kb upstream 10.0kb upstream 12437 true scaffold03577: 664868-677304 Cucumis sativus
Cucsa.355970 10.0kb upstream 10.0kb upstream 10000 false scaffold03577: 667305-677304 Cucumis sativus
Cucsa.355970 10.0kb downstream 10.0kb downstream 12437 true scaffold03577: 654868-667304 Cucumis sativus
Cucsa.355970 10.0kb downstream 10.0kb downstream 10000 false scaffold03577: 654868-664867 Cucumis sativus

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121605782 5273 Angiosperm Singleton cluster - no MSA
122236048 5265 Fabidae Singleton cluster - no MSA
123982261 5270 Rosid Singleton cluster - no MSA
123557936 5271 Pentapetalae Singleton cluster - no MSA
122592750 5272 Eudicot Singleton cluster - no MSA
120878072 5274 Embryophyte Singleton cluster - no MSA
122918961 5275 Viridiplantae Singleton cluster - no MSA

0 Rna Seq Expressions

0 Strain