Gene : Cucsa.178540 C. sativus v1.0
Defline:  (1 of 1) PTHR34803:SF2 - PHOTOSYSTEM I REACTION CENTER SUBUNIT XI, CHLOROPLASTIC Genomic Order:  46
Name:  ? Cucsa.178540 Secondary Identifier:  ? PAC:16967111
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Csativus PHOTOALL-PWY Cucumis sativus pathologic  
Csativus PWY-101 Cucumis sativus pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cucsa.178540 0.5kb upstream 0.5kb upstream 2021 true scaffold01227: 834570-836590 Cucumis sativus
Cucsa.178540 0.5kb upstream 0.5kb upstream 500 false scaffold01227: 834570-835069 Cucumis sativus
Cucsa.178540 0.5kb downstream 0.5kb downstream 2021 true scaffold01227: 835070-837090 Cucumis sativus
Cucsa.178540 0.5kb downstream 0.5kb downstream 500 false scaffold01227: 836591-837090 Cucumis sativus
Cucsa.178540 1.0kb upstream 1.0kb upstream 2521 true scaffold01227: 834070-836590 Cucumis sativus
Cucsa.178540 1.0kb upstream 1.0kb upstream 1000 false scaffold01227: 834070-835069 Cucumis sativus
Cucsa.178540 1.0kb downstream 1.0kb downstream 2521 true scaffold01227: 835070-837590 Cucumis sativus
Cucsa.178540 1.0kb downstream 1.0kb downstream 1000 false scaffold01227: 836591-837590 Cucumis sativus
Cucsa.178540 2.0kb upstream 2.0kb upstream 3521 true scaffold01227: 833070-836590 Cucumis sativus
Cucsa.178540 2.0kb upstream 2.0kb upstream 2000 false scaffold01227: 833070-835069 Cucumis sativus
Cucsa.178540 2.0kb downstream 2.0kb downstream 3521 true scaffold01227: 835070-838590 Cucumis sativus
Cucsa.178540 2.0kb downstream 2.0kb downstream 2000 false scaffold01227: 836591-838590 Cucumis sativus
Cucsa.178540 5.0kb upstream 5.0kb upstream 6521 true scaffold01227: 830070-836590 Cucumis sativus
Cucsa.178540 5.0kb upstream 5.0kb upstream 5000 false scaffold01227: 830070-835069 Cucumis sativus
Cucsa.178540 5.0kb downstream 5.0kb downstream 6521 true scaffold01227: 835070-841590 Cucumis sativus
Cucsa.178540 5.0kb downstream 5.0kb downstream 5000 false scaffold01227: 836591-841590 Cucumis sativus
Cucsa.178540 10.0kb upstream 10.0kb upstream 11521 true scaffold01227: 825070-836590 Cucumis sativus
Cucsa.178540 10.0kb upstream 10.0kb upstream 10000 false scaffold01227: 825070-835069 Cucumis sativus
Cucsa.178540 10.0kb downstream 10.0kb downstream 11521 true scaffold01227: 835070-846590 Cucumis sativus
Cucsa.178540 10.0kb downstream 10.0kb downstream 10000 false scaffold01227: 836591-846590 Cucumis sativus

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040995 5273 Angiosperm View MSA
122306566 5265 Fabidae View MSA
124061167 5270 Rosid View MSA
123750401 5271 Pentapetalae View MSA
122793402 5272 Eudicot View MSA
121343870 5274 Embryophyte View MSA
123424325 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain