Gene : Cucsa.031250 C. sativus v1.0
Defline:  (1 of 2) 6.1.1.9 - Valine--tRNA ligase / Valyl-tRNA synthetase Genomic Order:  6
Name:  ? Cucsa.031250 Secondary Identifier:  ? PAC:16952271
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Csativus TRNA-CHARGING-PWY Cucumis sativus pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cucsa.031250 0.5kb upstream 0.5kb upstream 56727 true scaffold00429: 127394-184120 Cucumis sativus
Cucsa.031250 0.5kb upstream 0.5kb upstream 500 false scaffold00429: 127394-127893 Cucumis sativus
Cucsa.031250 0.5kb downstream 0.5kb downstream 56727 true scaffold00429: 127894-184620 Cucumis sativus
Cucsa.031250 0.5kb downstream 0.5kb downstream 500 false scaffold00429: 184121-184620 Cucumis sativus
Cucsa.031250 1.0kb upstream 1.0kb upstream 57227 true scaffold00429: 126894-184120 Cucumis sativus
Cucsa.031250 1.0kb upstream 1.0kb upstream 1000 false scaffold00429: 126894-127893 Cucumis sativus
Cucsa.031250 1.0kb downstream 1.0kb downstream 57227 true scaffold00429: 127894-185120 Cucumis sativus
Cucsa.031250 1.0kb downstream 1.0kb downstream 1000 false scaffold00429: 184121-185120 Cucumis sativus
Cucsa.031250 2.0kb upstream 2.0kb upstream 58227 true scaffold00429: 125894-184120 Cucumis sativus
Cucsa.031250 2.0kb upstream 2.0kb upstream 2000 false scaffold00429: 125894-127893 Cucumis sativus
Cucsa.031250 2.0kb downstream 2.0kb downstream 58227 true scaffold00429: 127894-186120 Cucumis sativus
Cucsa.031250 2.0kb downstream 2.0kb downstream 2000 false scaffold00429: 184121-186120 Cucumis sativus
Cucsa.031250 5.0kb upstream 5.0kb upstream 61227 true scaffold00429: 122894-184120 Cucumis sativus
Cucsa.031250 5.0kb upstream 5.0kb upstream 5000 false scaffold00429: 122894-127893 Cucumis sativus
Cucsa.031250 5.0kb downstream 5.0kb downstream 61227 true scaffold00429: 127894-189120 Cucumis sativus
Cucsa.031250 5.0kb downstream 5.0kb downstream 5000 false scaffold00429: 184121-189120 Cucumis sativus
Cucsa.031250 10.0kb upstream 10.0kb upstream 66227 true scaffold00429: 117894-184120 Cucumis sativus
Cucsa.031250 10.0kb upstream 10.0kb upstream 10000 false scaffold00429: 117894-127893 Cucumis sativus
Cucsa.031250 10.0kb downstream 10.0kb downstream 66227 true scaffold00429: 127894-194120 Cucumis sativus
Cucsa.031250 10.0kb downstream 10.0kb downstream 10000 false scaffold00429: 184121-194120 Cucumis sativus

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312575 5265 Fabidae View MSA
124066992 5270 Rosid View MSA
123752070 5271 Pentapetalae View MSA
122788218 5272 Eudicot View MSA
122045228 5273 Angiosperm View MSA
121348805 5274 Embryophyte View MSA
123424302 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain