Gene : Cucsa.075340 C. sativus v1.0
Defline:  (1 of 10) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  10
Name:  ? Cucsa.075340 Secondary Identifier:  ? PAC:16955719
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cucsa.075340 0.5kb upstream 0.5kb upstream 1251 true scaffold00789: 77150-78400 Cucumis sativus
Cucsa.075340 0.5kb upstream 0.5kb upstream 500 false scaffold00789: 77901-78400 Cucumis sativus
Cucsa.075340 0.5kb downstream 0.5kb downstream 1251 true scaffold00789: 76650-77900 Cucumis sativus
Cucsa.075340 0.5kb downstream 0.5kb downstream 500 false scaffold00789: 76650-77149 Cucumis sativus
Cucsa.075340 1.0kb upstream 1.0kb upstream 1751 true scaffold00789: 77150-78900 Cucumis sativus
Cucsa.075340 1.0kb upstream 1.0kb upstream 1000 false scaffold00789: 77901-78900 Cucumis sativus
Cucsa.075340 1.0kb downstream 1.0kb downstream 1751 true scaffold00789: 76150-77900 Cucumis sativus
Cucsa.075340 1.0kb downstream 1.0kb downstream 1000 false scaffold00789: 76150-77149 Cucumis sativus
Cucsa.075340 2.0kb upstream 2.0kb upstream 2751 true scaffold00789: 77150-79900 Cucumis sativus
Cucsa.075340 2.0kb upstream 2.0kb upstream 2000 false scaffold00789: 77901-79900 Cucumis sativus
Cucsa.075340 2.0kb downstream 2.0kb downstream 2751 true scaffold00789: 75150-77900 Cucumis sativus
Cucsa.075340 2.0kb downstream 2.0kb downstream 2000 false scaffold00789: 75150-77149 Cucumis sativus
Cucsa.075340 5.0kb upstream 5.0kb upstream 5751 true scaffold00789: 77150-82900 Cucumis sativus
Cucsa.075340 5.0kb upstream 5.0kb upstream 5000 false scaffold00789: 77901-82900 Cucumis sativus
Cucsa.075340 5.0kb downstream 5.0kb downstream 5751 true scaffold00789: 72150-77900 Cucumis sativus
Cucsa.075340 5.0kb downstream 5.0kb downstream 5000 false scaffold00789: 72150-77149 Cucumis sativus
Cucsa.075340 10.0kb upstream 10.0kb upstream 10751 true scaffold00789: 77150-87900 Cucumis sativus
Cucsa.075340 10.0kb upstream 10.0kb upstream 10000 false scaffold00789: 77901-87900 Cucumis sativus
Cucsa.075340 10.0kb downstream 10.0kb downstream 10751 true scaffold00789: 67150-77900 Cucumis sativus
Cucsa.075340 10.0kb downstream 10.0kb downstream 10000 false scaffold00789: 67150-77149 Cucumis sativus

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122232495 5265 Fabidae Singleton cluster - no MSA
124074284 5270 Rosid View MSA
123751462 5271 Pentapetalae View MSA
122795351 5272 Eudicot View MSA
122048962 5273 Angiosperm View MSA
121311190 5274 Embryophyte View MSA
123348519 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain