Gene : MSH2 C. reinhardtii v5.6
Primary Identifier:  ? Cre01.g003500 Defline:  DNA mismatch repair protein, MutS homolog
Genomic Order:  81 Name:  ? Cre01.g003500
Secondary Identifier:  ? PAC:30789121
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Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre01.g003500 0.5kb upstream 0.5kb upstream 19622 true chromosome_1: 606456-626077 Chlamydomonas reinhardtii
Cre01.g003500 0.5kb upstream 0.5kb upstream 500 false chromosome_1: 606456-606955 Chlamydomonas reinhardtii
Cre01.g003500 0.5kb downstream 0.5kb downstream 19622 true chromosome_1: 606956-626577 Chlamydomonas reinhardtii
Cre01.g003500 0.5kb downstream 0.5kb downstream 500 false chromosome_1: 626078-626577 Chlamydomonas reinhardtii
Cre01.g003500 1.0kb upstream 1.0kb upstream 20122 true chromosome_1: 605956-626077 Chlamydomonas reinhardtii
Cre01.g003500 1.0kb upstream 1.0kb upstream 1000 false chromosome_1: 605956-606955 Chlamydomonas reinhardtii
Cre01.g003500 1.0kb downstream 1.0kb downstream 20122 true chromosome_1: 606956-627077 Chlamydomonas reinhardtii
Cre01.g003500 1.0kb downstream 1.0kb downstream 1000 false chromosome_1: 626078-627077 Chlamydomonas reinhardtii
Cre01.g003500 2.0kb upstream 2.0kb upstream 21122 true chromosome_1: 604956-626077 Chlamydomonas reinhardtii
Cre01.g003500 2.0kb upstream 2.0kb upstream 2000 false chromosome_1: 604956-606955 Chlamydomonas reinhardtii
Cre01.g003500 2.0kb downstream 2.0kb downstream 21122 true chromosome_1: 606956-628077 Chlamydomonas reinhardtii
Cre01.g003500 2.0kb downstream 2.0kb downstream 2000 false chromosome_1: 626078-628077 Chlamydomonas reinhardtii
Cre01.g003500 5.0kb upstream 5.0kb upstream 24122 true chromosome_1: 601956-626077 Chlamydomonas reinhardtii
Cre01.g003500 5.0kb upstream 5.0kb upstream 5000 false chromosome_1: 601956-606955 Chlamydomonas reinhardtii
Cre01.g003500 5.0kb downstream 5.0kb downstream 24122 true chromosome_1: 606956-631077 Chlamydomonas reinhardtii
Cre01.g003500 5.0kb downstream 5.0kb downstream 5000 false chromosome_1: 626078-631077 Chlamydomonas reinhardtii
Cre01.g003500 10.0kb upstream 10.0kb upstream 29122 true chromosome_1: 596956-626077 Chlamydomonas reinhardtii
Cre01.g003500 10.0kb upstream 10.0kb upstream 10000 false chromosome_1: 596956-606955 Chlamydomonas reinhardtii
Cre01.g003500 10.0kb downstream 10.0kb downstream 29122 true chromosome_1: 606956-636077 Chlamydomonas reinhardtii
Cre01.g003500 10.0kb downstream 10.0kb downstream 10000 false chromosome_1: 626078-636077 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124094493 5260 Chlorophyte View MSA
123411319 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.113       Low
cufflinks 0.38        
cufflinks 0.31        
cufflinks 0.349        
cufflinks 0.263        
cufflinks 0.268        
cufflinks 0.472       High
cufflinks 0.388        
cufflinks 0.23        
cufflinks 0.072       Low
cufflinks 0.369        
cufflinks 0.464       High
cufflinks 0.145       Low
cufflinks 0.287        
cufflinks 0.297        
cufflinks 0.197        
cufflinks 0.266        
cufflinks 0.332        
cufflinks 0.12       Low
cufflinks 0.532       High
cufflinks 0.346        
cufflinks 0.257        
cufflinks 0.334        
cufflinks 0.311        
cufflinks 0.264        
cufflinks 0.404053 0.00285082 0.805255   Low
cufflinks 3.22808 0.851514 5.60465    
cufflinks 1.47698 0.0 3.14316   High
cufflinks 1.62766 0.270176 2.98515    
cufflinks 1.39196 0.213704 2.57022    

0 Strain