Gene : Cre01.g006900 C. reinhardtii v5.6
Defline:  (1 of 1) PF00415//PF05548//PF13540 - Regulator of chromosome condensation (RCC1) repeat (RCC1) // Gametolysin peptidase M11 (Peptidase_M11) // Regulator of chromosome condensation (RCC1) repeat (RCC1_2) Genomic Order:  165
Name:  ? Cre01.g006900 Secondary Identifier:  ? PAC:30789539
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre01.g006900 0.5kb upstream 0.5kb upstream 20326 true chromosome_1: 1369582-1389907 Chlamydomonas reinhardtii
Cre01.g006900 0.5kb upstream 0.5kb upstream 500 false chromosome_1: 1389408-1389907 Chlamydomonas reinhardtii
Cre01.g006900 0.5kb downstream 0.5kb downstream 20326 true chromosome_1: 1369082-1389407 Chlamydomonas reinhardtii
Cre01.g006900 0.5kb downstream 0.5kb downstream 500 false chromosome_1: 1369082-1369581 Chlamydomonas reinhardtii
Cre01.g006900 1.0kb upstream 1.0kb upstream 20826 true chromosome_1: 1369582-1390407 Chlamydomonas reinhardtii
Cre01.g006900 1.0kb upstream 1.0kb upstream 1000 false chromosome_1: 1389408-1390407 Chlamydomonas reinhardtii
Cre01.g006900 1.0kb downstream 1.0kb downstream 20826 true chromosome_1: 1368582-1389407 Chlamydomonas reinhardtii
Cre01.g006900 1.0kb downstream 1.0kb downstream 1000 false chromosome_1: 1368582-1369581 Chlamydomonas reinhardtii
Cre01.g006900 2.0kb upstream 2.0kb upstream 21826 true chromosome_1: 1369582-1391407 Chlamydomonas reinhardtii
Cre01.g006900 2.0kb upstream 2.0kb upstream 2000 false chromosome_1: 1389408-1391407 Chlamydomonas reinhardtii
Cre01.g006900 2.0kb downstream 2.0kb downstream 21826 true chromosome_1: 1367582-1389407 Chlamydomonas reinhardtii
Cre01.g006900 2.0kb downstream 2.0kb downstream 2000 false chromosome_1: 1367582-1369581 Chlamydomonas reinhardtii
Cre01.g006900 5.0kb upstream 5.0kb upstream 24826 true chromosome_1: 1369582-1394407 Chlamydomonas reinhardtii
Cre01.g006900 5.0kb upstream 5.0kb upstream 5000 false chromosome_1: 1389408-1394407 Chlamydomonas reinhardtii
Cre01.g006900 5.0kb downstream 5.0kb downstream 24826 true chromosome_1: 1364582-1389407 Chlamydomonas reinhardtii
Cre01.g006900 5.0kb downstream 5.0kb downstream 5000 false chromosome_1: 1364582-1369581 Chlamydomonas reinhardtii
Cre01.g006900 10.0kb upstream 10.0kb upstream 29826 true chromosome_1: 1369582-1399407 Chlamydomonas reinhardtii
Cre01.g006900 10.0kb upstream 10.0kb upstream 10000 false chromosome_1: 1389408-1399407 Chlamydomonas reinhardtii
Cre01.g006900 10.0kb downstream 10.0kb downstream 29826 true chromosome_1: 1359582-1389407 Chlamydomonas reinhardtii
Cre01.g006900 10.0kb downstream 10.0kb downstream 10000 false chromosome_1: 1359582-1369581 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124080477 5260 Chlorophyte Singleton cluster - no MSA
123398258 5275 Viridiplantae Singleton cluster - no MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.127        
cufflinks 0.199        
cufflinks 0.177        
cufflinks 0.445       High
cufflinks 0.13     Low  
cufflinks 0.12     Low  
cufflinks 0.242        
cufflinks 0.408       High
cufflinks 0.16        
cufflinks 0.055     Low Low
cufflinks 0.474       High
cufflinks 0.242        
cufflinks 0.114     Low Low
cufflinks 0.125     Low  
cufflinks 0.258        
cufflinks 0.177        
cufflinks 0.361        
cufflinks 0.205        
cufflinks 0.081       Low
cufflinks 0.285        
cufflinks 0.251        
cufflinks 0.448       High
cufflinks 0.141     Low  
cufflinks 0.498       High
cufflinks 0.376        
cufflinks 0.352371 0.0 0.706516   High
cufflinks 0.921388 0.0160369 1.82674    
cufflinks 1.40299 0.0 3.06176    
cufflinks 0.973126 0.121243 1.82501   High
cufflinks 1.44433 0.244368 2.6443    

0 Strain