Gene : Cre01.g040850 C. reinhardtii v5.6
Defline:  (1 of 7) PF06011 - Transient receptor potential (TRP) ion channel (TRP) Genomic Order:  887
Name:  ? Cre01.g040850 Secondary Identifier:  ? PAC:30789298
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre01.g040850 0.5kb upstream 0.5kb upstream 14200 true chromosome_1: 5720958-5735157 Chlamydomonas reinhardtii
Cre01.g040850 0.5kb upstream 0.5kb upstream 500 false chromosome_1: 5734658-5735157 Chlamydomonas reinhardtii
Cre01.g040850 0.5kb downstream 0.5kb downstream 14200 true chromosome_1: 5720458-5734657 Chlamydomonas reinhardtii
Cre01.g040850 0.5kb downstream 0.5kb downstream 500 false chromosome_1: 5720458-5720957 Chlamydomonas reinhardtii
Cre01.g040850 1.0kb upstream 1.0kb upstream 14700 true chromosome_1: 5720958-5735657 Chlamydomonas reinhardtii
Cre01.g040850 1.0kb upstream 1.0kb upstream 1000 false chromosome_1: 5734658-5735657 Chlamydomonas reinhardtii
Cre01.g040850 1.0kb downstream 1.0kb downstream 14700 true chromosome_1: 5719958-5734657 Chlamydomonas reinhardtii
Cre01.g040850 1.0kb downstream 1.0kb downstream 1000 false chromosome_1: 5719958-5720957 Chlamydomonas reinhardtii
Cre01.g040850 2.0kb upstream 2.0kb upstream 15700 true chromosome_1: 5720958-5736657 Chlamydomonas reinhardtii
Cre01.g040850 2.0kb upstream 2.0kb upstream 2000 false chromosome_1: 5734658-5736657 Chlamydomonas reinhardtii
Cre01.g040850 2.0kb downstream 2.0kb downstream 15700 true chromosome_1: 5718958-5734657 Chlamydomonas reinhardtii
Cre01.g040850 2.0kb downstream 2.0kb downstream 2000 false chromosome_1: 5718958-5720957 Chlamydomonas reinhardtii
Cre01.g040850 5.0kb upstream 5.0kb upstream 18700 true chromosome_1: 5720958-5739657 Chlamydomonas reinhardtii
Cre01.g040850 5.0kb upstream 5.0kb upstream 5000 false chromosome_1: 5734658-5739657 Chlamydomonas reinhardtii
Cre01.g040850 5.0kb downstream 5.0kb downstream 18700 true chromosome_1: 5715958-5734657 Chlamydomonas reinhardtii
Cre01.g040850 5.0kb downstream 5.0kb downstream 5000 false chromosome_1: 5715958-5720957 Chlamydomonas reinhardtii
Cre01.g040850 10.0kb upstream 10.0kb upstream 23700 true chromosome_1: 5720958-5744657 Chlamydomonas reinhardtii
Cre01.g040850 10.0kb upstream 10.0kb upstream 10000 false chromosome_1: 5734658-5744657 Chlamydomonas reinhardtii
Cre01.g040850 10.0kb downstream 10.0kb downstream 23700 true chromosome_1: 5710958-5734657 Chlamydomonas reinhardtii
Cre01.g040850 10.0kb downstream 10.0kb downstream 10000 false chromosome_1: 5710958-5720957 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124093912 5260 Chlorophyte View MSA
123410911 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.143       Low
cufflinks 0.279        
cufflinks 0.529        
cufflinks 0.748       High
cufflinks 0.223        
cufflinks 0.211        
cufflinks 0.509        
cufflinks 0.445        
cufflinks 0.162       Low
cufflinks 0.121       Low
cufflinks 1.164       High
cufflinks 0.444        
cufflinks 0.151       Low
cufflinks 0.224        
cufflinks 0.543        
cufflinks 0.181       Low
cufflinks 0.454        
cufflinks 0.38        
cufflinks 0.155       Low
cufflinks 0.909       High
cufflinks 0.548        
cufflinks 0.337        
cufflinks 0.363        
cufflinks 0.525        
cufflinks 0.331        
cufflinks 0.656667 0.00482827 1.30851   High
cufflinks 1.82049 0.264474 3.37651    
cufflinks 3.47197 0.0 7.02091    
cufflinks 2.72172 0.194559 5.24888    
cufflinks 3.59361 0.722016 6.4652    

0 Strain