Gene : HMO1 C. reinhardtii v5.6
Primary Identifier:  ? Cre10.g423500 Defline:  (1 of 1) PTHR35703:SF2 - HEME OXYGENASE 4, CHLOROPLASTIC
Genomic Order:  139 Name:  ? Cre10.g423500
Secondary Identifier:  ? PAC:30790611
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Creinhardtii PWY-5874 Chlamydomonas reinhardtii pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre10.g423500 0.5kb upstream 0.5kb upstream 3498 true chromosome_10: 827143-830640 Chlamydomonas reinhardtii
Cre10.g423500 0.5kb upstream 0.5kb upstream 500 false chromosome_10: 830141-830640 Chlamydomonas reinhardtii
Cre10.g423500 0.5kb downstream 0.5kb downstream 3498 true chromosome_10: 826643-830140 Chlamydomonas reinhardtii
Cre10.g423500 0.5kb downstream 0.5kb downstream 500 false chromosome_10: 826643-827142 Chlamydomonas reinhardtii
Cre10.g423500 1.0kb upstream 1.0kb upstream 3998 true chromosome_10: 827143-831140 Chlamydomonas reinhardtii
Cre10.g423500 1.0kb upstream 1.0kb upstream 1000 false chromosome_10: 830141-831140 Chlamydomonas reinhardtii
Cre10.g423500 1.0kb downstream 1.0kb downstream 3998 true chromosome_10: 826143-830140 Chlamydomonas reinhardtii
Cre10.g423500 1.0kb downstream 1.0kb downstream 1000 false chromosome_10: 826143-827142 Chlamydomonas reinhardtii
Cre10.g423500 2.0kb upstream 2.0kb upstream 4998 true chromosome_10: 827143-832140 Chlamydomonas reinhardtii
Cre10.g423500 2.0kb upstream 2.0kb upstream 2000 false chromosome_10: 830141-832140 Chlamydomonas reinhardtii
Cre10.g423500 2.0kb downstream 2.0kb downstream 4998 true chromosome_10: 825143-830140 Chlamydomonas reinhardtii
Cre10.g423500 2.0kb downstream 2.0kb downstream 2000 false chromosome_10: 825143-827142 Chlamydomonas reinhardtii
Cre10.g423500 5.0kb upstream 5.0kb upstream 7998 true chromosome_10: 827143-835140 Chlamydomonas reinhardtii
Cre10.g423500 5.0kb upstream 5.0kb upstream 5000 false chromosome_10: 830141-835140 Chlamydomonas reinhardtii
Cre10.g423500 5.0kb downstream 5.0kb downstream 7998 true chromosome_10: 822143-830140 Chlamydomonas reinhardtii
Cre10.g423500 5.0kb downstream 5.0kb downstream 5000 false chromosome_10: 822143-827142 Chlamydomonas reinhardtii
Cre10.g423500 10.0kb upstream 10.0kb upstream 12998 true chromosome_10: 827143-840140 Chlamydomonas reinhardtii
Cre10.g423500 10.0kb upstream 10.0kb upstream 10000 false chromosome_10: 830141-840140 Chlamydomonas reinhardtii
Cre10.g423500 10.0kb downstream 10.0kb downstream 12998 true chromosome_10: 817143-830140 Chlamydomonas reinhardtii
Cre10.g423500 10.0kb downstream 10.0kb downstream 10000 false chromosome_10: 817143-827142 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124110380 5260 Chlorophyte View MSA
123424297 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 48.781     High  
cufflinks 56.039     High  
cufflinks 72.632     High High
cufflinks 64.453     High High
cufflinks 53.287     High  
cufflinks 56.944     High  
cufflinks 37.04     High Low
cufflinks 61.865     High  
cufflinks 61.814     High  
cufflinks 40.172     High Low
cufflinks 54.559     High  
cufflinks 55.676     High  
cufflinks 59.947     High  
cufflinks 65.305     High High
cufflinks 43.349     High Low
cufflinks 57.692     High  
cufflinks 52.896     High  
cufflinks 68.728     High High
cufflinks 40.569     High Low
cufflinks 55.946     High  
cufflinks 44.933     High Low
cufflinks 45.985     High  
cufflinks 54.383     High  
cufflinks 58.444     High  
cufflinks 51.16     High  
cufflinks 88.43 0.0 180.319 High  
cufflinks 96.2097 18.7321 173.687 High  
cufflinks 74.0924 0.0 153.328 High  
cufflinks 71.9264 0.0 145.946 High  
cufflinks 101.765 6.39998 197.13 High  

0 Strain