Gene : TXC1 C. reinhardtii v5.6
Primary Identifier:  ? Cre11.g477850 Defline:  (1 of 1) K15979 - staphylococcal nuclease domain-containing protein 1 (SND1)
Genomic Order:  403 Name:  ? Cre11.g477850
Secondary Identifier:  ? PAC:30776004
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0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre11.g477850 0.5kb upstream 0.5kb upstream 15879 true chromosome_11: 2882573-2898451 Chlamydomonas reinhardtii
Cre11.g477850 0.5kb upstream 0.5kb upstream 500 false chromosome_11: 2897952-2898451 Chlamydomonas reinhardtii
Cre11.g477850 0.5kb downstream 0.5kb downstream 15879 true chromosome_11: 2882073-2897951 Chlamydomonas reinhardtii
Cre11.g477850 0.5kb downstream 0.5kb downstream 500 false chromosome_11: 2882073-2882572 Chlamydomonas reinhardtii
Cre11.g477850 1.0kb upstream 1.0kb upstream 16379 true chromosome_11: 2882573-2898951 Chlamydomonas reinhardtii
Cre11.g477850 1.0kb upstream 1.0kb upstream 1000 false chromosome_11: 2897952-2898951 Chlamydomonas reinhardtii
Cre11.g477850 1.0kb downstream 1.0kb downstream 16379 true chromosome_11: 2881573-2897951 Chlamydomonas reinhardtii
Cre11.g477850 1.0kb downstream 1.0kb downstream 1000 false chromosome_11: 2881573-2882572 Chlamydomonas reinhardtii
Cre11.g477850 2.0kb upstream 2.0kb upstream 17379 true chromosome_11: 2882573-2899951 Chlamydomonas reinhardtii
Cre11.g477850 2.0kb upstream 2.0kb upstream 2000 false chromosome_11: 2897952-2899951 Chlamydomonas reinhardtii
Cre11.g477850 2.0kb downstream 2.0kb downstream 17379 true chromosome_11: 2880573-2897951 Chlamydomonas reinhardtii
Cre11.g477850 2.0kb downstream 2.0kb downstream 2000 false chromosome_11: 2880573-2882572 Chlamydomonas reinhardtii
Cre11.g477850 5.0kb upstream 5.0kb upstream 20379 true chromosome_11: 2882573-2902951 Chlamydomonas reinhardtii
Cre11.g477850 5.0kb upstream 5.0kb upstream 5000 false chromosome_11: 2897952-2902951 Chlamydomonas reinhardtii
Cre11.g477850 5.0kb downstream 5.0kb downstream 20379 true chromosome_11: 2877573-2897951 Chlamydomonas reinhardtii
Cre11.g477850 5.0kb downstream 5.0kb downstream 5000 false chromosome_11: 2877573-2882572 Chlamydomonas reinhardtii
Cre11.g477850 10.0kb upstream 10.0kb upstream 25379 true chromosome_11: 2882573-2907951 Chlamydomonas reinhardtii
Cre11.g477850 10.0kb upstream 10.0kb upstream 10000 false chromosome_11: 2897952-2907951 Chlamydomonas reinhardtii
Cre11.g477850 10.0kb downstream 10.0kb downstream 25379 true chromosome_11: 2872573-2897951 Chlamydomonas reinhardtii
Cre11.g477850 10.0kb downstream 10.0kb downstream 10000 false chromosome_11: 2872573-2882572 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124108617 5260 Chlorophyte View MSA
123426864 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.757        
cufflinks 1.813        
cufflinks 4.289        
cufflinks 5.172       High
cufflinks 3.554        
cufflinks 4.095        
cufflinks 3.33        
cufflinks 4.171        
cufflinks 3.873        
cufflinks 2.623        
cufflinks 2.941        
cufflinks 3.805        
cufflinks 3.887        
cufflinks 2.777        
cufflinks 3.879        
cufflinks 2.853        
cufflinks 2.082        
cufflinks 1.659       Low
cufflinks 1.555       Low
cufflinks 2.8        
cufflinks 3.174        
cufflinks 0.887       Low
cufflinks 3.152        
cufflinks 3.761        
cufflinks 0.945       Low
cufflinks 15.9615 0.459387 31.4637   Low
cufflinks 35.5087 7.706 63.3113 High  
cufflinks 4.667 0.0 9.47863    
cufflinks 18.4131 0.298956 36.5273   Low
cufflinks 26.336 2.93355 49.7384    

0 Strain