Gene : Cre11.g479383 C. reinhardtii v5.6
Defline:  (1 of 17) PF08016 - Polycystin cation channel (PKD_channel) Genomic Order:  439
Name:  ? Cre11.g479383 Secondary Identifier:  ? PAC:30775698
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre11.g479383 0.5kb upstream 0.5kb upstream 13442 true chromosome_11: 3174424-3187865 Chlamydomonas reinhardtii
Cre11.g479383 0.5kb upstream 0.5kb upstream 500 false chromosome_11: 3187366-3187865 Chlamydomonas reinhardtii
Cre11.g479383 0.5kb downstream 0.5kb downstream 13442 true chromosome_11: 3173924-3187365 Chlamydomonas reinhardtii
Cre11.g479383 0.5kb downstream 0.5kb downstream 500 false chromosome_11: 3173924-3174423 Chlamydomonas reinhardtii
Cre11.g479383 1.0kb upstream 1.0kb upstream 13942 true chromosome_11: 3174424-3188365 Chlamydomonas reinhardtii
Cre11.g479383 1.0kb upstream 1.0kb upstream 1000 false chromosome_11: 3187366-3188365 Chlamydomonas reinhardtii
Cre11.g479383 1.0kb downstream 1.0kb downstream 13942 true chromosome_11: 3173424-3187365 Chlamydomonas reinhardtii
Cre11.g479383 1.0kb downstream 1.0kb downstream 1000 false chromosome_11: 3173424-3174423 Chlamydomonas reinhardtii
Cre11.g479383 2.0kb upstream 2.0kb upstream 14942 true chromosome_11: 3174424-3189365 Chlamydomonas reinhardtii
Cre11.g479383 2.0kb upstream 2.0kb upstream 2000 false chromosome_11: 3187366-3189365 Chlamydomonas reinhardtii
Cre11.g479383 2.0kb downstream 2.0kb downstream 14942 true chromosome_11: 3172424-3187365 Chlamydomonas reinhardtii
Cre11.g479383 2.0kb downstream 2.0kb downstream 2000 false chromosome_11: 3172424-3174423 Chlamydomonas reinhardtii
Cre11.g479383 5.0kb upstream 5.0kb upstream 17942 true chromosome_11: 3174424-3192365 Chlamydomonas reinhardtii
Cre11.g479383 5.0kb upstream 5.0kb upstream 5000 false chromosome_11: 3187366-3192365 Chlamydomonas reinhardtii
Cre11.g479383 5.0kb downstream 5.0kb downstream 17942 true chromosome_11: 3169424-3187365 Chlamydomonas reinhardtii
Cre11.g479383 5.0kb downstream 5.0kb downstream 5000 false chromosome_11: 3169424-3174423 Chlamydomonas reinhardtii
Cre11.g479383 10.0kb upstream 10.0kb upstream 22942 true chromosome_11: 3174424-3197365 Chlamydomonas reinhardtii
Cre11.g479383 10.0kb upstream 10.0kb upstream 10000 false chromosome_11: 3187366-3197365 Chlamydomonas reinhardtii
Cre11.g479383 10.0kb downstream 10.0kb downstream 22942 true chromosome_11: 3164424-3187365 Chlamydomonas reinhardtii
Cre11.g479383 10.0kb downstream 10.0kb downstream 10000 false chromosome_11: 3164424-3174423 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124076651 5260 Chlorophyte Singleton cluster - no MSA
123394729 5275 Viridiplantae Singleton cluster - no MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.092       Low
cufflinks 0.354        
cufflinks 0.48        
cufflinks 0.47        
cufflinks 0.299        
cufflinks 0.362        
cufflinks 0.408        
cufflinks 0.486        
cufflinks 0.239        
cufflinks 0.173       Low
cufflinks 0.537       High
cufflinks 0.456        
cufflinks 0.416        
cufflinks 0.349        
cufflinks 0.427        
cufflinks 0.21        
cufflinks 0.247        
cufflinks 0.341        
cufflinks 0.124       Low
cufflinks 0.546       High
cufflinks 0.461        
cufflinks 0.188       Low
cufflinks 0.423        
cufflinks 0.614       High
cufflinks 0.229        
cufflinks 1.01413 0.133248 1.89502    
cufflinks 0.960277 0.0178847 1.90267   Low
cufflinks 0.692346 0.0 1.60345    
cufflinks 1.36137 0.214956 2.50778    
cufflinks 4.33296 0.856107 7.80981   High

0 Strain