Gene : VIPP2 C. reinhardtii v5.6
Primary Identifier:  ? Cre11.g468050 Defline:  (1 of 2) K03969 - phage shock protein A (pspA)
Genomic Order:  284 Name:  ? Cre11.g468050
Secondary Identifier:  ? PAC:30776053
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0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre11.g468050 0.5kb upstream 0.5kb upstream 5233 true chromosome_11: 1866044-1871276 Chlamydomonas reinhardtii
Cre11.g468050 0.5kb upstream 0.5kb upstream 500 false chromosome_11: 1866044-1866543 Chlamydomonas reinhardtii
Cre11.g468050 0.5kb downstream 0.5kb downstream 5233 true chromosome_11: 1866544-1871776 Chlamydomonas reinhardtii
Cre11.g468050 0.5kb downstream 0.5kb downstream 500 false chromosome_11: 1871277-1871776 Chlamydomonas reinhardtii
Cre11.g468050 1.0kb upstream 1.0kb upstream 5733 true chromosome_11: 1865544-1871276 Chlamydomonas reinhardtii
Cre11.g468050 1.0kb upstream 1.0kb upstream 1000 false chromosome_11: 1865544-1866543 Chlamydomonas reinhardtii
Cre11.g468050 1.0kb downstream 1.0kb downstream 5733 true chromosome_11: 1866544-1872276 Chlamydomonas reinhardtii
Cre11.g468050 1.0kb downstream 1.0kb downstream 1000 false chromosome_11: 1871277-1872276 Chlamydomonas reinhardtii
Cre11.g468050 2.0kb upstream 2.0kb upstream 6733 true chromosome_11: 1864544-1871276 Chlamydomonas reinhardtii
Cre11.g468050 2.0kb upstream 2.0kb upstream 2000 false chromosome_11: 1864544-1866543 Chlamydomonas reinhardtii
Cre11.g468050 2.0kb downstream 2.0kb downstream 6733 true chromosome_11: 1866544-1873276 Chlamydomonas reinhardtii
Cre11.g468050 2.0kb downstream 2.0kb downstream 2000 false chromosome_11: 1871277-1873276 Chlamydomonas reinhardtii
Cre11.g468050 5.0kb upstream 5.0kb upstream 9733 true chromosome_11: 1861544-1871276 Chlamydomonas reinhardtii
Cre11.g468050 5.0kb upstream 5.0kb upstream 5000 false chromosome_11: 1861544-1866543 Chlamydomonas reinhardtii
Cre11.g468050 5.0kb downstream 5.0kb downstream 9733 true chromosome_11: 1866544-1876276 Chlamydomonas reinhardtii
Cre11.g468050 5.0kb downstream 5.0kb downstream 5000 false chromosome_11: 1871277-1876276 Chlamydomonas reinhardtii
Cre11.g468050 10.0kb upstream 10.0kb upstream 14733 true chromosome_11: 1856544-1871276 Chlamydomonas reinhardtii
Cre11.g468050 10.0kb upstream 10.0kb upstream 10000 false chromosome_11: 1856544-1866543 Chlamydomonas reinhardtii
Cre11.g468050 10.0kb downstream 10.0kb downstream 14733 true chromosome_11: 1866544-1881276 Chlamydomonas reinhardtii
Cre11.g468050 10.0kb downstream 10.0kb downstream 10000 false chromosome_11: 1871277-1881276 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124111094 5260 Chlorophyte View MSA
123427031 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.063        
cufflinks 0.853        
cufflinks 5.666       High
cufflinks 1.402        
cufflinks 3.258       High
cufflinks 1.647        
cufflinks 0.633        
cufflinks 1.539        
cufflinks 0.451       Low
cufflinks 1.476        
cufflinks 1.195        
cufflinks 0.865        
cufflinks 10.784     High High
cufflinks 4.556       High
cufflinks 0.61        
cufflinks 0.34       Low
cufflinks 0.781        
cufflinks 4.623       High
cufflinks 0.964        
cufflinks 0.878        
cufflinks 0.78        
cufflinks 0.49        
cufflinks 0.455       Low
cufflinks 1.326        
cufflinks 0.411       Low
cufflinks 103.301 0.0 211.474 High  
cufflinks 14.846 4.04985 25.6421    
cufflinks 3.77918 0.0 8.16188   Low
cufflinks 2.59217 0.22368 4.96066    
cufflinks 10.5607 2.10874 19.0126    

0 Strain