Gene : TIC40 C. reinhardtii v5.6
Primary Identifier:  ? Cre12.g508000 Defline:  possible chloroplast protein translocon component Tic40
Genomic Order:  386 Name:  ? Cre12.g508000
Secondary Identifier:  ? PAC:30792702
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0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre12.g508000 0.5kb upstream 0.5kb upstream 4593 true chromosome_12: 2248083-2252675 Chlamydomonas reinhardtii
Cre12.g508000 0.5kb upstream 0.5kb upstream 500 false chromosome_12: 2248083-2248582 Chlamydomonas reinhardtii
Cre12.g508000 0.5kb downstream 0.5kb downstream 4593 true chromosome_12: 2248583-2253175 Chlamydomonas reinhardtii
Cre12.g508000 0.5kb downstream 0.5kb downstream 500 false chromosome_12: 2252676-2253175 Chlamydomonas reinhardtii
Cre12.g508000 1.0kb upstream 1.0kb upstream 5093 true chromosome_12: 2247583-2252675 Chlamydomonas reinhardtii
Cre12.g508000 1.0kb upstream 1.0kb upstream 1000 false chromosome_12: 2247583-2248582 Chlamydomonas reinhardtii
Cre12.g508000 1.0kb downstream 1.0kb downstream 5093 true chromosome_12: 2248583-2253675 Chlamydomonas reinhardtii
Cre12.g508000 1.0kb downstream 1.0kb downstream 1000 false chromosome_12: 2252676-2253675 Chlamydomonas reinhardtii
Cre12.g508000 2.0kb upstream 2.0kb upstream 6093 true chromosome_12: 2246583-2252675 Chlamydomonas reinhardtii
Cre12.g508000 2.0kb upstream 2.0kb upstream 2000 false chromosome_12: 2246583-2248582 Chlamydomonas reinhardtii
Cre12.g508000 2.0kb downstream 2.0kb downstream 6093 true chromosome_12: 2248583-2254675 Chlamydomonas reinhardtii
Cre12.g508000 2.0kb downstream 2.0kb downstream 2000 false chromosome_12: 2252676-2254675 Chlamydomonas reinhardtii
Cre12.g508000 5.0kb upstream 5.0kb upstream 9093 true chromosome_12: 2243583-2252675 Chlamydomonas reinhardtii
Cre12.g508000 5.0kb upstream 5.0kb upstream 5000 false chromosome_12: 2243583-2248582 Chlamydomonas reinhardtii
Cre12.g508000 5.0kb downstream 5.0kb downstream 9093 true chromosome_12: 2248583-2257675 Chlamydomonas reinhardtii
Cre12.g508000 5.0kb downstream 5.0kb downstream 5000 false chromosome_12: 2252676-2257675 Chlamydomonas reinhardtii
Cre12.g508000 10.0kb upstream 10.0kb upstream 14093 true chromosome_12: 2238583-2252675 Chlamydomonas reinhardtii
Cre12.g508000 10.0kb upstream 10.0kb upstream 10000 false chromosome_12: 2238583-2248582 Chlamydomonas reinhardtii
Cre12.g508000 10.0kb downstream 10.0kb downstream 14093 true chromosome_12: 2248583-2262675 Chlamydomonas reinhardtii
Cre12.g508000 10.0kb downstream 10.0kb downstream 10000 false chromosome_12: 2252676-2262675 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124108689 5260 Chlorophyte View MSA
123424576 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.322     High  
cufflinks 24.829     High  
cufflinks 26.928     High  
cufflinks 13.561        
cufflinks 16.849     High  
cufflinks 24.812     High  
cufflinks 12.455        
cufflinks 15.811        
cufflinks 31.119     High High
cufflinks 13.57     High  
cufflinks 13.006        
cufflinks 18.328     High  
cufflinks 11.403     High  
cufflinks 25.173     High  
cufflinks 16.535     High  
cufflinks 33.885     High High
cufflinks 17.794     High  
cufflinks 19.842     High  
cufflinks 2.517       Low
cufflinks 6.072       Low
cufflinks 14.915     High  
cufflinks 20.592     High  
cufflinks 11.205        
cufflinks 18.404     High  
cufflinks 22.504     High  
cufflinks 75.9595 0.0 154.88 High Low
cufflinks 71.2581 15.3446 127.172 High  
cufflinks 34.6785 0.0 70.4531 High  
cufflinks 29.8087 1.16548 58.452 High Low
cufflinks 42.7866 5.26235 80.3108 High High

0 Strain