Gene : CHLI2 C. reinhardtii v5.6
Primary Identifier:  ? Cre12.g510800 Defline:  (1 of 2) PTHR32039//PTHR32039:SF9 - FAMILY NOT NAMED // MAGNESIUM-CHELATASE SUBUNIT CHLI-2, CHLOROPLASTIC
Genomic Order:  323 Name:  ? Cre12.g510800
Secondary Identifier:  ? PAC:30791685
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Creinhardtii CHLOROPHYLL-SYN Chlamydomonas reinhardtii pathologic  
Creinhardtii PWY-7159 Chlamydomonas reinhardtii pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre12.g510800 0.5kb upstream 0.5kb upstream 4450 true chromosome_12: 1918571-1923020 Chlamydomonas reinhardtii
Cre12.g510800 0.5kb upstream 0.5kb upstream 500 false chromosome_12: 1922521-1923020 Chlamydomonas reinhardtii
Cre12.g510800 0.5kb downstream 0.5kb downstream 4450 true chromosome_12: 1918071-1922520 Chlamydomonas reinhardtii
Cre12.g510800 0.5kb downstream 0.5kb downstream 500 false chromosome_12: 1918071-1918570 Chlamydomonas reinhardtii
Cre12.g510800 1.0kb upstream 1.0kb upstream 4950 true chromosome_12: 1918571-1923520 Chlamydomonas reinhardtii
Cre12.g510800 1.0kb upstream 1.0kb upstream 1000 false chromosome_12: 1922521-1923520 Chlamydomonas reinhardtii
Cre12.g510800 1.0kb downstream 1.0kb downstream 4950 true chromosome_12: 1917571-1922520 Chlamydomonas reinhardtii
Cre12.g510800 1.0kb downstream 1.0kb downstream 1000 false chromosome_12: 1917571-1918570 Chlamydomonas reinhardtii
Cre12.g510800 2.0kb upstream 2.0kb upstream 5950 true chromosome_12: 1918571-1924520 Chlamydomonas reinhardtii
Cre12.g510800 2.0kb upstream 2.0kb upstream 2000 false chromosome_12: 1922521-1924520 Chlamydomonas reinhardtii
Cre12.g510800 2.0kb downstream 2.0kb downstream 5950 true chromosome_12: 1916571-1922520 Chlamydomonas reinhardtii
Cre12.g510800 2.0kb downstream 2.0kb downstream 2000 false chromosome_12: 1916571-1918570 Chlamydomonas reinhardtii
Cre12.g510800 5.0kb upstream 5.0kb upstream 8950 true chromosome_12: 1918571-1927520 Chlamydomonas reinhardtii
Cre12.g510800 5.0kb upstream 5.0kb upstream 5000 false chromosome_12: 1922521-1927520 Chlamydomonas reinhardtii
Cre12.g510800 5.0kb downstream 5.0kb downstream 8950 true chromosome_12: 1913571-1922520 Chlamydomonas reinhardtii
Cre12.g510800 5.0kb downstream 5.0kb downstream 5000 false chromosome_12: 1913571-1918570 Chlamydomonas reinhardtii
Cre12.g510800 10.0kb upstream 10.0kb upstream 13950 true chromosome_12: 1918571-1932520 Chlamydomonas reinhardtii
Cre12.g510800 10.0kb upstream 10.0kb upstream 10000 false chromosome_12: 1922521-1932520 Chlamydomonas reinhardtii
Cre12.g510800 10.0kb downstream 10.0kb downstream 13950 true chromosome_12: 1908571-1922520 Chlamydomonas reinhardtii
Cre12.g510800 10.0kb downstream 10.0kb downstream 10000 false chromosome_12: 1908571-1918570 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124109587 5260 Chlorophyte View MSA
123426232 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 93.841     High High
cufflinks 45.953     High  
cufflinks 26.86     High  
cufflinks 31.652     High  
cufflinks 49.442     High  
cufflinks 42.898     High  
cufflinks 8.135       Low
cufflinks 34.317     High  
cufflinks 105.067     High High
cufflinks 21.545     High  
cufflinks 22.759     High  
cufflinks 39.964     High  
cufflinks 31.578     High  
cufflinks 46.087     High  
cufflinks 35.472     High  
cufflinks 118.177     High High
cufflinks 93.876     High High
cufflinks 38.928     High  
cufflinks 1.453       Low
cufflinks 6.302       Low
cufflinks 33.464     High  
cufflinks 104.1     High High
cufflinks 11.471       Low
cufflinks 29.298     High  
cufflinks 105.451     High High
cufflinks 52.5733 0.0 105.824 High Low
cufflinks 117.249 22.4328 212.066 High  
cufflinks 39.0761 0.0 79.4476 High  
cufflinks 44.4888 0.0748017 88.9028 High Low
cufflinks 56.3762 5.80943 106.943 High  

0 Strain