Gene : TSM2 C. reinhardtii v5.6
Primary Identifier:  ? Cre12.g487100 Defline:  (1 of 1) PTHR11946//PTHR11946:SF89 - ISOLEUCYL, LEUCYL, TYROSYL, VALYL AND METHIONYL-TRNA SYNTHETASES // METHIONYL-TRNA SYNTHETASE
Genomic Order:  244 Name:  ? Cre12.g487100
Secondary Identifier:  ? PAC:30791892
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Creinhardtii TRNA-CHARGING-PWY Chlamydomonas reinhardtii pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre12.g487100 0.5kb upstream 0.5kb upstream 8324 true chromosome_12: 1514811-1523134 Chlamydomonas reinhardtii
Cre12.g487100 0.5kb upstream 0.5kb upstream 500 false chromosome_12: 1514811-1515310 Chlamydomonas reinhardtii
Cre12.g487100 0.5kb downstream 0.5kb downstream 8324 true chromosome_12: 1515311-1523634 Chlamydomonas reinhardtii
Cre12.g487100 0.5kb downstream 0.5kb downstream 500 false chromosome_12: 1523135-1523634 Chlamydomonas reinhardtii
Cre12.g487100 1.0kb upstream 1.0kb upstream 8824 true chromosome_12: 1514311-1523134 Chlamydomonas reinhardtii
Cre12.g487100 1.0kb upstream 1.0kb upstream 1000 false chromosome_12: 1514311-1515310 Chlamydomonas reinhardtii
Cre12.g487100 1.0kb downstream 1.0kb downstream 8824 true chromosome_12: 1515311-1524134 Chlamydomonas reinhardtii
Cre12.g487100 1.0kb downstream 1.0kb downstream 1000 false chromosome_12: 1523135-1524134 Chlamydomonas reinhardtii
Cre12.g487100 2.0kb upstream 2.0kb upstream 9824 true chromosome_12: 1513311-1523134 Chlamydomonas reinhardtii
Cre12.g487100 2.0kb upstream 2.0kb upstream 2000 false chromosome_12: 1513311-1515310 Chlamydomonas reinhardtii
Cre12.g487100 2.0kb downstream 2.0kb downstream 9824 true chromosome_12: 1515311-1525134 Chlamydomonas reinhardtii
Cre12.g487100 2.0kb downstream 2.0kb downstream 2000 false chromosome_12: 1523135-1525134 Chlamydomonas reinhardtii
Cre12.g487100 5.0kb upstream 5.0kb upstream 12824 true chromosome_12: 1510311-1523134 Chlamydomonas reinhardtii
Cre12.g487100 5.0kb upstream 5.0kb upstream 5000 false chromosome_12: 1510311-1515310 Chlamydomonas reinhardtii
Cre12.g487100 5.0kb downstream 5.0kb downstream 12824 true chromosome_12: 1515311-1528134 Chlamydomonas reinhardtii
Cre12.g487100 5.0kb downstream 5.0kb downstream 5000 false chromosome_12: 1523135-1528134 Chlamydomonas reinhardtii
Cre12.g487100 10.0kb upstream 10.0kb upstream 17824 true chromosome_12: 1505311-1523134 Chlamydomonas reinhardtii
Cre12.g487100 10.0kb upstream 10.0kb upstream 10000 false chromosome_12: 1505311-1515310 Chlamydomonas reinhardtii
Cre12.g487100 10.0kb downstream 10.0kb downstream 17824 true chromosome_12: 1515311-1533134 Chlamydomonas reinhardtii
Cre12.g487100 10.0kb downstream 10.0kb downstream 10000 false chromosome_12: 1523135-1533134 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124112072 5260 Chlorophyte View MSA
123428788 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.183        
cufflinks 2.824        
cufflinks 1.602        
cufflinks 2.452        
cufflinks 2.739        
cufflinks 2.414        
cufflinks 0.66       Low
cufflinks 2.133        
cufflinks 4.531       High
cufflinks 1.2        
cufflinks 2.409        
cufflinks 2.502        
cufflinks 1.407        
cufflinks 2.967        
cufflinks 2.056        
cufflinks 4.807       High
cufflinks 3.686        
cufflinks 2.056        
cufflinks 0.212       Low
cufflinks 0.961       Low
cufflinks 2.208        
cufflinks 3.626        
cufflinks 1.304        
cufflinks 2.692        
cufflinks 4.13       High
cufflinks 6.7195 0.950709 12.4883    
cufflinks 17.7776 4.77049 30.7847   High
cufflinks 3.35459 0.0 7.04672    
cufflinks 5.17469 0.840888 9.5085   Low
cufflinks 11.9716 2.24276 21.7004   High

0 Strain