Gene : Cre12.g537000 C. reinhardtii v5.6
Defline:  (1 of 1) PF02041 - Auxin binding protein (Auxin_BP) Genomic Order:  1186
Name:  ? Cre12.g537000 Secondary Identifier:  ? PAC:30793353
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0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre12.g537000 0.5kb upstream 0.5kb upstream 3661 true chromosome_12: 6256070-6259730 Chlamydomonas reinhardtii
Cre12.g537000 0.5kb upstream 0.5kb upstream 500 false chromosome_12: 6256070-6256569 Chlamydomonas reinhardtii
Cre12.g537000 0.5kb downstream 0.5kb downstream 3661 true chromosome_12: 6256570-6260230 Chlamydomonas reinhardtii
Cre12.g537000 0.5kb downstream 0.5kb downstream 500 false chromosome_12: 6259731-6260230 Chlamydomonas reinhardtii
Cre12.g537000 1.0kb upstream 1.0kb upstream 4161 true chromosome_12: 6255570-6259730 Chlamydomonas reinhardtii
Cre12.g537000 1.0kb upstream 1.0kb upstream 1000 false chromosome_12: 6255570-6256569 Chlamydomonas reinhardtii
Cre12.g537000 1.0kb downstream 1.0kb downstream 4161 true chromosome_12: 6256570-6260730 Chlamydomonas reinhardtii
Cre12.g537000 1.0kb downstream 1.0kb downstream 1000 false chromosome_12: 6259731-6260730 Chlamydomonas reinhardtii
Cre12.g537000 2.0kb upstream 2.0kb upstream 5161 true chromosome_12: 6254570-6259730 Chlamydomonas reinhardtii
Cre12.g537000 2.0kb upstream 2.0kb upstream 2000 false chromosome_12: 6254570-6256569 Chlamydomonas reinhardtii
Cre12.g537000 2.0kb downstream 2.0kb downstream 5161 true chromosome_12: 6256570-6261730 Chlamydomonas reinhardtii
Cre12.g537000 2.0kb downstream 2.0kb downstream 2000 false chromosome_12: 6259731-6261730 Chlamydomonas reinhardtii
Cre12.g537000 5.0kb upstream 5.0kb upstream 8161 true chromosome_12: 6251570-6259730 Chlamydomonas reinhardtii
Cre12.g537000 5.0kb upstream 5.0kb upstream 5000 false chromosome_12: 6251570-6256569 Chlamydomonas reinhardtii
Cre12.g537000 5.0kb downstream 5.0kb downstream 8161 true chromosome_12: 6256570-6264730 Chlamydomonas reinhardtii
Cre12.g537000 5.0kb downstream 5.0kb downstream 5000 false chromosome_12: 6259731-6264730 Chlamydomonas reinhardtii
Cre12.g537000 10.0kb upstream 10.0kb upstream 13161 true chromosome_12: 6246570-6259730 Chlamydomonas reinhardtii
Cre12.g537000 10.0kb upstream 10.0kb upstream 10000 false chromosome_12: 6246570-6256569 Chlamydomonas reinhardtii
Cre12.g537000 10.0kb downstream 10.0kb downstream 13161 true chromosome_12: 6256570-6269730 Chlamydomonas reinhardtii
Cre12.g537000 10.0kb downstream 10.0kb downstream 10000 false chromosome_12: 6259731-6269730 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124081775 5260 Chlorophyte View MSA
123426893 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.563       Low
cufflinks 5.226        
cufflinks 7.327        
cufflinks 4.527        
cufflinks 4.673        
cufflinks 8.384       High
cufflinks 7.078        
cufflinks 7.589        
cufflinks 2.558        
cufflinks 3.707        
cufflinks 4.262        
cufflinks 3.428        
cufflinks 3.69        
cufflinks 2.02        
cufflinks 6.637        
cufflinks 0.533       Low
cufflinks 0.439       Low
cufflinks 6.988        
cufflinks 6.425     High  
cufflinks 1.13       Low
cufflinks 5.121        
cufflinks 3.156        
cufflinks 4.911        
cufflinks 5.549        
cufflinks 2.338        
cufflinks 5.47047 0.7586 10.1823   High
cufflinks 78.3835 17.2904 139.477 High  
cufflinks 9.85333 0.0 20.1556   Low
cufflinks 6.31623 0.98083 11.6516    
cufflinks 9.40794 1.7635 17.0524    

0 Strain