Gene : SPCS C. reinhardtii v5.6
Primary Identifier:  ? Cre12.g547750 Defline:  (1 of 1) 2.9.1.2 - O-phospho-L-seryl-tRNA(Sec):L-selenocysteinyl-tRNA synthase / SepSecS
Genomic Order:  1557 Name:  ? Cre12.g547750
Secondary Identifier:  ? PAC:30793196
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Creinhardtii PWY-6281 Chlamydomonas reinhardtii pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre12.g547750 0.5kb upstream 0.5kb upstream 5286 true chromosome_12: 8517758-8523043 Chlamydomonas reinhardtii
Cre12.g547750 0.5kb upstream 0.5kb upstream 500 false chromosome_12: 8522544-8523043 Chlamydomonas reinhardtii
Cre12.g547750 0.5kb downstream 0.5kb downstream 5286 true chromosome_12: 8517258-8522543 Chlamydomonas reinhardtii
Cre12.g547750 0.5kb downstream 0.5kb downstream 500 false chromosome_12: 8517258-8517757 Chlamydomonas reinhardtii
Cre12.g547750 1.0kb upstream 1.0kb upstream 5786 true chromosome_12: 8517758-8523543 Chlamydomonas reinhardtii
Cre12.g547750 1.0kb upstream 1.0kb upstream 1000 false chromosome_12: 8522544-8523543 Chlamydomonas reinhardtii
Cre12.g547750 1.0kb downstream 1.0kb downstream 5786 true chromosome_12: 8516758-8522543 Chlamydomonas reinhardtii
Cre12.g547750 1.0kb downstream 1.0kb downstream 1000 false chromosome_12: 8516758-8517757 Chlamydomonas reinhardtii
Cre12.g547750 2.0kb upstream 2.0kb upstream 6786 true chromosome_12: 8517758-8524543 Chlamydomonas reinhardtii
Cre12.g547750 2.0kb upstream 2.0kb upstream 2000 false chromosome_12: 8522544-8524543 Chlamydomonas reinhardtii
Cre12.g547750 2.0kb downstream 2.0kb downstream 6786 true chromosome_12: 8515758-8522543 Chlamydomonas reinhardtii
Cre12.g547750 2.0kb downstream 2.0kb downstream 2000 false chromosome_12: 8515758-8517757 Chlamydomonas reinhardtii
Cre12.g547750 5.0kb upstream 5.0kb upstream 9786 true chromosome_12: 8517758-8527543 Chlamydomonas reinhardtii
Cre12.g547750 5.0kb upstream 5.0kb upstream 5000 false chromosome_12: 8522544-8527543 Chlamydomonas reinhardtii
Cre12.g547750 5.0kb downstream 5.0kb downstream 9786 true chromosome_12: 8512758-8522543 Chlamydomonas reinhardtii
Cre12.g547750 5.0kb downstream 5.0kb downstream 5000 false chromosome_12: 8512758-8517757 Chlamydomonas reinhardtii
Cre12.g547750 10.0kb upstream 10.0kb upstream 14786 true chromosome_12: 8517758-8532543 Chlamydomonas reinhardtii
Cre12.g547750 10.0kb upstream 10.0kb upstream 10000 false chromosome_12: 8522544-8532543 Chlamydomonas reinhardtii
Cre12.g547750 10.0kb downstream 10.0kb downstream 14786 true chromosome_12: 8507758-8522543 Chlamydomonas reinhardtii
Cre12.g547750 10.0kb downstream 10.0kb downstream 10000 false chromosome_12: 8507758-8517757 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124108814 5260 Chlorophyte View MSA
123422867 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.518       Low
cufflinks 1.171        
cufflinks 0.966        
cufflinks 1.181        
cufflinks 0.981        
cufflinks 1.008        
cufflinks 1.341        
cufflinks 1.347        
cufflinks 0.394       Low
cufflinks 0.3       Low
cufflinks 1.078        
cufflinks 1.364        
cufflinks 0.608        
cufflinks 1.072        
cufflinks 0.93        
cufflinks 0.808        
cufflinks 1.066        
cufflinks 1.008        
cufflinks 0.206       Low
cufflinks 1.458        
cufflinks 0.84        
cufflinks 1.006        
cufflinks 1.346        
cufflinks 1.368        
cufflinks 1.012        
cufflinks 2.53271 0.235755 4.82967   Low
cufflinks 4.22504 0.563621 7.88645    
cufflinks 4.3346 0.0 9.24945    
cufflinks 3.4075 0.441951 6.37305    
cufflinks 8.142 1.59224 14.6918    

0 Strain