Gene : Cre12.g556450 C. reinhardtii v5.6
Defline:  (1 of 1) K15151 - mediator of RNA polymerase II transcription subunit 10 (MED10, NUT2) Genomic Order:  1366
Name:  ? Cre12.g556450 Secondary Identifier:  ? PAC:30792095
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre12.g556450 0.5kb upstream 0.5kb upstream 2380 true chromosome_12: 7445348-7447727 Chlamydomonas reinhardtii
Cre12.g556450 0.5kb upstream 0.5kb upstream 500 false chromosome_12: 7447228-7447727 Chlamydomonas reinhardtii
Cre12.g556450 0.5kb downstream 0.5kb downstream 2380 true chromosome_12: 7444848-7447227 Chlamydomonas reinhardtii
Cre12.g556450 0.5kb downstream 0.5kb downstream 500 false chromosome_12: 7444848-7445347 Chlamydomonas reinhardtii
Cre12.g556450 1.0kb upstream 1.0kb upstream 2880 true chromosome_12: 7445348-7448227 Chlamydomonas reinhardtii
Cre12.g556450 1.0kb upstream 1.0kb upstream 1000 false chromosome_12: 7447228-7448227 Chlamydomonas reinhardtii
Cre12.g556450 1.0kb downstream 1.0kb downstream 2880 true chromosome_12: 7444348-7447227 Chlamydomonas reinhardtii
Cre12.g556450 1.0kb downstream 1.0kb downstream 1000 false chromosome_12: 7444348-7445347 Chlamydomonas reinhardtii
Cre12.g556450 2.0kb upstream 2.0kb upstream 3880 true chromosome_12: 7445348-7449227 Chlamydomonas reinhardtii
Cre12.g556450 2.0kb upstream 2.0kb upstream 2000 false chromosome_12: 7447228-7449227 Chlamydomonas reinhardtii
Cre12.g556450 2.0kb downstream 2.0kb downstream 3880 true chromosome_12: 7443348-7447227 Chlamydomonas reinhardtii
Cre12.g556450 2.0kb downstream 2.0kb downstream 2000 false chromosome_12: 7443348-7445347 Chlamydomonas reinhardtii
Cre12.g556450 5.0kb upstream 5.0kb upstream 6880 true chromosome_12: 7445348-7452227 Chlamydomonas reinhardtii
Cre12.g556450 5.0kb upstream 5.0kb upstream 5000 false chromosome_12: 7447228-7452227 Chlamydomonas reinhardtii
Cre12.g556450 5.0kb downstream 5.0kb downstream 6880 true chromosome_12: 7440348-7447227 Chlamydomonas reinhardtii
Cre12.g556450 5.0kb downstream 5.0kb downstream 5000 false chromosome_12: 7440348-7445347 Chlamydomonas reinhardtii
Cre12.g556450 10.0kb upstream 10.0kb upstream 11880 true chromosome_12: 7445348-7457227 Chlamydomonas reinhardtii
Cre12.g556450 10.0kb upstream 10.0kb upstream 10000 false chromosome_12: 7447228-7457227 Chlamydomonas reinhardtii
Cre12.g556450 10.0kb downstream 10.0kb downstream 11880 true chromosome_12: 7435348-7447227 Chlamydomonas reinhardtii
Cre12.g556450 10.0kb downstream 10.0kb downstream 10000 false chromosome_12: 7435348-7445347 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124093459 5260 Chlorophyte View MSA
123425675 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.451        
cufflinks 9.542        
cufflinks 11.787       High
cufflinks 8.849        
cufflinks 8.324        
cufflinks 8.894        
cufflinks 8.944        
cufflinks 8.729        
cufflinks 6.677       Low
cufflinks 10.562     High  
cufflinks 5.911       Low
cufflinks 8.042        
cufflinks 13.934     High High
cufflinks 9.811        
cufflinks 6.735       Low
cufflinks 6.786       Low
cufflinks 6.106       Low
cufflinks 10.349        
cufflinks 11.78     High High
cufflinks 10.125        
cufflinks 6.242       Low
cufflinks 8.326        
cufflinks 10.53        
cufflinks 10.185        
cufflinks 6.135       Low
cufflinks 9.68383 1.56113 17.8065    
cufflinks 7.26557 0.602861 13.9283   Low
cufflinks 11.5559 0.0 23.8484    
cufflinks 7.04862 0.955555 13.1417    
cufflinks 8.37697 1.00298 15.751    

0 Strain