Gene : TSF1 C. reinhardtii v5.6
Primary Identifier:  ? Cre13.g603900 Defline:  (1 of 1) K01890 - phenylalanyl-tRNA synthetase beta chain (FARSB, pheT)
Genomic Order:  733 Name:  ? Cre13.g603900
Secondary Identifier:  ? PAC:30783937
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Creinhardtii TRNA-CHARGING-PWY Chlamydomonas reinhardtii pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre13.g603900 0.5kb upstream 0.5kb upstream 12234 true chromosome_13: 4573421-4585654 Chlamydomonas reinhardtii
Cre13.g603900 0.5kb upstream 0.5kb upstream 500 false chromosome_13: 4585155-4585654 Chlamydomonas reinhardtii
Cre13.g603900 0.5kb downstream 0.5kb downstream 12234 true chromosome_13: 4572921-4585154 Chlamydomonas reinhardtii
Cre13.g603900 0.5kb downstream 0.5kb downstream 500 false chromosome_13: 4572921-4573420 Chlamydomonas reinhardtii
Cre13.g603900 1.0kb upstream 1.0kb upstream 12734 true chromosome_13: 4573421-4586154 Chlamydomonas reinhardtii
Cre13.g603900 1.0kb upstream 1.0kb upstream 1000 false chromosome_13: 4585155-4586154 Chlamydomonas reinhardtii
Cre13.g603900 1.0kb downstream 1.0kb downstream 12734 true chromosome_13: 4572421-4585154 Chlamydomonas reinhardtii
Cre13.g603900 1.0kb downstream 1.0kb downstream 1000 false chromosome_13: 4572421-4573420 Chlamydomonas reinhardtii
Cre13.g603900 2.0kb upstream 2.0kb upstream 13734 true chromosome_13: 4573421-4587154 Chlamydomonas reinhardtii
Cre13.g603900 2.0kb upstream 2.0kb upstream 2000 false chromosome_13: 4585155-4587154 Chlamydomonas reinhardtii
Cre13.g603900 2.0kb downstream 2.0kb downstream 13734 true chromosome_13: 4571421-4585154 Chlamydomonas reinhardtii
Cre13.g603900 2.0kb downstream 2.0kb downstream 2000 false chromosome_13: 4571421-4573420 Chlamydomonas reinhardtii
Cre13.g603900 5.0kb upstream 5.0kb upstream 16734 true chromosome_13: 4573421-4590154 Chlamydomonas reinhardtii
Cre13.g603900 5.0kb upstream 5.0kb upstream 5000 false chromosome_13: 4585155-4590154 Chlamydomonas reinhardtii
Cre13.g603900 5.0kb downstream 5.0kb downstream 16734 true chromosome_13: 4568421-4585154 Chlamydomonas reinhardtii
Cre13.g603900 5.0kb downstream 5.0kb downstream 5000 false chromosome_13: 4568421-4573420 Chlamydomonas reinhardtii
Cre13.g603900 10.0kb upstream 10.0kb upstream 21734 true chromosome_13: 4573421-4595154 Chlamydomonas reinhardtii
Cre13.g603900 10.0kb upstream 10.0kb upstream 10000 false chromosome_13: 4585155-4595154 Chlamydomonas reinhardtii
Cre13.g603900 10.0kb downstream 10.0kb downstream 21734 true chromosome_13: 4563421-4585154 Chlamydomonas reinhardtii
Cre13.g603900 10.0kb downstream 10.0kb downstream 10000 false chromosome_13: 4563421-4573420 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124110066 5260 Chlorophyte View MSA
123425015 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.38       High
cufflinks 7.274        
cufflinks 4.706        
cufflinks 4.268        
cufflinks 6.841        
cufflinks 6.253        
cufflinks 3.615        
cufflinks 4.533        
cufflinks 9.809       High
cufflinks 2.024       Low
cufflinks 3.735        
cufflinks 4.191        
cufflinks 2.987        
cufflinks 6.584        
cufflinks 3.329        
cufflinks 10.808       High
cufflinks 3.994        
cufflinks 5.253        
cufflinks 0.606       Low
cufflinks 2.234       Low
cufflinks 3.952        
cufflinks 4.81        
cufflinks 2.854        
cufflinks 4.353        
cufflinks 4.438        
cufflinks 30.8579 0.0 61.941 High Low
cufflinks 44.1761 10.0389 78.3134 High  
cufflinks 2.16956 0.0 4.79111   Low
cufflinks 15.6001 1.01701 30.1832   Low
cufflinks 33.1341 3.78259 62.4856 High High

0 Strain